C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: myosin VC
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000036555 Myo5c-201 ENSMUSG00000033590 10090 + 9:75232014-75305451 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000036555
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000036555 1.877±2.11 0.242±0.05 1.954±0.53 0.199±0.15 1.093±0.34 20.131±2.55 0.561±0.21 1.521±0.35 0.172±0.23 12.668±1.78 1.468±0.97 2.656±1.17 0.713±0.35 0.354±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004YL CIL_0004YL_0002 CGP 9:75232014-75344964

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003774 IEA motor activity
GO:0005524 IEA ATP binding
GO:0008152 IEA metabolic process
GO:0016459 IEA myosin complex
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000088542 protein_coding Danio_rerio 3.00004e-41 176
ENSDART00000132951 protein_coding Danio_rerio 3.00004e-41 176
ENST00000261839 MYO5C-001 protein_coding Homo_sapiens 0 5426
ENST00000285039 MYO5B-001 protein_coding Homo_sapiens 0 401
ENST00000541028 MYO5C-003 processed_transcript Homo_sapiens 0 699
ENST00000558242 MYO5C-008 retained_intron Homo_sapiens 0 359
ENST00000558479 MYO5C-007 protein_coding Homo_sapiens 0 682
ENST00000558902 MYO5C-002 nonsense_mediated_decay Homo_sapiens 0 1238
ENST00000559459 MYO5C-004 nonsense_mediated_decay Homo_sapiens 0 1435
ENST00000559696 MYO5C-009 retained_intron Homo_sapiens 0 693
ENST00000560809 MYO5C-005 nonsense_mediated_decay Homo_sapiens 0 1290
ENST00000616031 MYO5B-201 protein_coding Homo_sapiens 0 375

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