C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: myosin VB
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000285039 MYO5B-001 ENSG00000167306 9606 - 18:49822813-50195093 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonKidneyLungOvaryPlacentaTestisENST00000285039
Transcript ID Brain Colon Kidney Lung Ovary Placenta Testis
ENST00000285039 0.552±0.09 5.542±0.00 5.068±0.00 1.882±0.09 1.477±0.82 0.704±0.02 0.977±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000B5 CIL_0000B5_0002 CGP 18:49822813-50266522

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000146 TAS microfilament motor activity
GO:0003774 IEA motor activity
GO:0003779 IEA actin binding
GO:0005515 IPI:IEA protein binding
GO:0005516 IEA calmodulin binding
GO:0005524 IEA ATP binding
GO:0006833 TAS water transport
GO:0008152 IEA metabolic process
GO:0015031 IEA protein transport
GO:0016192 IMP vesicle-mediated transport
GO:0016459 IEA myosin complex
GO:0017137 IPI Rab GTPase binding
GO:0030659 TAS cytoplasmic vesicle membrane
GO:0032439 IMP endosome localization
GO:0043234 IDA protein complex
GO:0045179 IDA apical cortex
GO:0055037 IC recycling endosome
GO:0055085 TAS transmembrane transport
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000121875 Myo5b-002 protein_coding Mus_musculus 0 6279
ENSMUST00000074157 Myo5b-001 protein_coding Mus_musculus 0 4268
ENSMUST00000120161 Myo5b-003 processed_transcript Mus_musculus 0 1810
ENSMUST00000154986 Myo5b-004 retained_intron Mus_musculus 0 1615
ENSMUST00000125882 Myo5b-005 protein_coding Mus_musculus 0 649
ENSMUST00000140904 Myo5b-008 processed_transcript Mus_musculus 0 592
ENSMUST00000146253 Myo5b-009 processed_transcript Mus_musculus 0 501
ENSMUST00000177366 Myo5b-011 protein_coding Mus_musculus 0 418
ENSDART00000058337 myo5ab-201 protein_coding Danio_rerio 0 407
ENSDART00000149548 myo5ab-001 protein_coding Danio_rerio 0 407
ENSMUST00000036555 Myo5c-201 protein_coding Mus_musculus 0 401
ENSMUST00000125751 Myo5b-007 processed_transcript Mus_musculus 0 346
ENSMUST00000122914 Myo5b-010 retained_intron Mus_musculus 0 327

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