C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted pseudogene 5884
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000036712 Gm5884-201 ENSMUSG00000037827 10090 + 6:128644838-128647096 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000036712
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000036712 2.772±0.65 0.850±0.10 0.366±0.07 0.800±0.54 1.741±0.62 2.093±0.60 3.170±0.48 1.682±0.35 0.670±0.33 2.024±0.24 0.330±0.10 2.514±0.98 0.630±0.07 3.878±0.47

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005769 ISS early endosome
GO:0005829 ISS cytosol
GO:0006886 IEA intracellular protein transport
GO:0016020 ISS membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000382034 TOM1-201 protein_coding Homo_sapiens 0 937
ENST00000395736 TOM1-013 nonsense_mediated_decay Homo_sapiens 0 562
ENST00000404284 TOM1-003 nonsense_mediated_decay Homo_sapiens 0 797
ENST00000411850 TOM1-202 protein_coding Homo_sapiens 0 1712
ENST00000424387 TOM1-002 nonsense_mediated_decay Homo_sapiens 0 1458
ENST00000425375 TOM1-203 protein_coding Homo_sapiens 0 1026
ENST00000439512 TOM1-011 nonsense_mediated_decay Homo_sapiens 0 719
ENST00000443206 TOM1-012 protein_coding Homo_sapiens 0 610
ENST00000447733 TOM1-204 protein_coding Homo_sapiens 0 1583
ENST00000449058 TOM1-001 protein_coding Homo_sapiens 0 1725
ENST00000449508 TOM1-009 nonsense_mediated_decay Homo_sapiens 0 407
ENST00000456128 TOM1-008 protein_coding Homo_sapiens 0 1092
ENST00000465529 TOM1-005 retained_intron Homo_sapiens 0 259
ENST00000487670 TOM1-007 retained_intron Homo_sapiens 0 339
ENST00000491987 TOM1-015 retained_intron Homo_sapiens 0 370
ENST00000497448 TOM1-014 retained_intron Homo_sapiens 0 222
ENST00000608674 TOM1-017 protein_coding Homo_sapiens 0 532
ENST00000608749 TOM1-016 protein_coding Homo_sapiens 0 575

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