C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collectin sub-family member 10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000036737 Colec10-201 ENSMUSG00000038591 10090 + 15:54410774-54466358 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartLiverLungOvaryPlacentaTestisENSMUST00000036737
Transcript ID Adipose Bladder Brain Breast Colon Heart Liver Lung Ovary Placenta Testis
ENSMUST00000036737 0.018±0.01 0.218±0.00 0.006±0.00 0.038±0.02 0.940±0.17 0.016±0.01 6.217±1.30 0.041±0.02 0.034±0.03 2.269±2.89 0.054±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005I4 CIL_0005I4_0002 CGP 15:54250619-54466358
CIL_0005I3 CIL_0005I3_0002 CGP 15:54410774-54602846

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005537 IDA mannose binding
GO:0005576 IEA extracellular region
GO:0005581 IEA collagen trimer
GO:0005634 NAS nucleus
GO:0005737 IEA cytoplasm
GO:0005829 NAS cytosol
GO:0006952 NAS defense response
GO:0007157 NAS heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0009790 NAS embryo development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000332843 COLEC10-001 protein_coding Homo_sapiens 0 911

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