C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: S phase cyclin A-associated protein in the ER
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000037408 Scaper-201 ENSMUSG00000034007 10090 - 9:55549883-55919605 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000037408
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000037408 2.680±0.27 1.989±0.92 0.462±0.02 5.545±0.15 2.332±1.05 1.952±0.75 0.606±0.00 1.860±0.36 0.344±0.28 3.425±0.23 0.200±0.00 2.299±1.43 2.072±2.48 7.317±3.41

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000245 CIL_000245_0002 CGP 9:55538672-55919605

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000303521 SCAPER-007 retained_intron Homo_sapiens 0 4115
ENST00000324767 SCAPER-201 protein_coding Homo_sapiens 0 3777
ENST00000538941 SCAPER-003 protein_coding Homo_sapiens 0 3777
ENST00000562890 SCAPER-012 processed_transcript Homo_sapiens 0 287
ENST00000562948 SCAPER-005 retained_intron Homo_sapiens 0 291
ENST00000563246 SCAPER-021 processed_transcript Homo_sapiens 0 412
ENST00000563290 SCAPER-001 protein_coding Homo_sapiens 0 3777
ENST00000563688 SCAPER-019 retained_intron Homo_sapiens 0 560
ENST00000563919 SCAPER-009 protein_coding Homo_sapiens 0 497
ENST00000564022 SCAPER-015 protein_coding Homo_sapiens 2e-38 163
ENST00000564177 SCAPER-011 protein_coding Homo_sapiens 0 636
ENST00000564590 SCAPER-002 protein_coding Homo_sapiens 0 2590
ENST00000564757 SCAPER-018 nonsense_mediated_decay Homo_sapiens 0 407
ENST00000565372 SCAPER-023 protein_coding Homo_sapiens 0 346
ENST00000565507 SCAPER-004 nonsense_mediated_decay Homo_sapiens 0 1376
ENST00000565970 SCAPER-008 protein_coding Homo_sapiens 0 2494
ENST00000567618 SCAPER-013 processed_transcript Homo_sapiens 0 364
ENST00000568382 SCAPER-010 protein_coding Homo_sapiens 0 396
ENST00000568428 SCAPER-016 processed_transcript Homo_sapiens 0 630
ENST00000568549 SCAPER-014 nonsense_mediated_decay Homo_sapiens 2e-28 130
ENST00000569395 SCAPER-022 processed_transcript Homo_sapiens 0 425
ENST00000569784 SCAPER-017 processed_transcript Homo_sapiens 0 254

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