C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: adaptor-related protein complex 5, mu 1 subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000037473 Ap5m1-201 ENSMUSG00000036291 10090 + 14:49066495-49087723 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000037473
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000037473 6.014±1.64 8.096±1.63 3.365±0.00 2.063±0.00 6.956±0.76 8.346±0.35 3.774±0.29 8.185±2.09 4.437±0.80 6.213±1.37 2.237±0.43 6.376±1.65 4.591±1.17 3.248±0.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007P7 CIL_0007P7_0002 UCNEbase 14:48393330-49089945
CIL_000869 CIL_000869_0002 VISTA 14:48499224-49101650
CIL_0009BX CIL_0009BX_0002 VISTA 14:48514603-49116118
CIL_000822 CIL_000822_0002 VISTA 14:48552340-49156614
CIL_0005ZZ CIL_0005ZZ_0003 CGP 14:48657679-49066653
CIL_000600 CIL_000600_0003 CGP 14:49012146-49087723
CIL_0005ZX CIL_0005ZX_0003 CGP 14:49066495-49191031

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005764 ISS lysosome
GO:0005770 ISS late endosome
GO:0005829 ISS cytosol
GO:0006886 IEA intracellular protein transport
GO:0016020 ISS membrane
GO:0016192 IEA vesicle-mediated transport
GO:0016197 ISS endosomal transport
GO:0030119 ISS AP-type membrane coat adaptor complex
GO:0030131 IEA clathrin adaptor complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261558 AP5M1-001 protein_coding Homo_sapiens 0 1628
ENST00000431972 AP5M1-003 protein_coding Homo_sapiens 0 1513
ENST00000554863 AP5M1-008 protein_coding Homo_sapiens 0 307
ENST00000555448 AP5M1-005 nonsense_mediated_decay Homo_sapiens 0 523
ENST00000556377 AP5M1-009 nonsense_mediated_decay Homo_sapiens 0 243
ENST00000556723 AP5M1-007 processed_transcript Homo_sapiens 0 660

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