C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005ZZ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000011235-ENSDARG00000060323 CGP 7955 17:44291216-44487389
GeneTranscriptPositionBiotype
ENSDARG00000011235 (otx2)
orthodenticle homolog 2 		ENSDART00000008816 (otx2-002) 44291272-44296095 protein_coding
ENSDART00000126097 (otx2-001) 44291216-44294264 protein_coding
ENSDART00000156648 (otx2-003) 44292556-44296277 protein_coding
ENSDARG00000060323 (exoc5)
exocyst complex component 5 		ENSDART00000130198 (exoc5-201) 44457792-44487262 protein_coding
ENSDART00000148786 (exoc5-001) 44460327-44487389 protein_coding
ENSDARG00000097410 (si:dkey-224a6.4)
si:dkey-224a6.4 		ENSDART00000153511 (si:dkey-224a6.4-001) 44401850-44456180 lincRNA
ENSDARG00000097731 (si:dkey-166f24.2)
si:dkey-166f24.2 		ENSDART00000156631 (si:dkey-166f24.2-001) 44296165-44299524 antisense

Danio rerio Ensembl (Zv9)

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CIL_0005ZZ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000165588-ENSG00000070367 CGP 9606 14:56799905-57269008
GeneTranscriptPositionBiotype
ENSG00000053770 (AP5M1)
adaptor-related protein complex 5, mu 1 subunit 		ENST00000261558 (AP5M1-001) 57268909-57298742 protein_coding
ENST00000431972 (AP5M1-003) 57269056-57288925 protein_coding
ENST00000554213 (AP5M1-006) 57269094-57271365 processed_transcript
ENST00000554863 (AP5M1-008) 57282985-57286564 protein_coding
ENST00000554931 (AP5M1-002) 57268924-57275469 retained_intron
ENST00000555448 (AP5M1-005) 57269026-57283019 nonsense_mediated_decay
ENST00000556377 (AP5M1-009) 57286223-57290074 nonsense_mediated_decay
ENST00000556723 (AP5M1-007) 57278422-57283243 processed_transcript
ENST00000556995 (AP5M1-004) 57268940-57274723 protein_coding
ENSG00000070367 (EXOC5)
exocyst complex component 5 		ENST00000340918 (EXOC5-002) 57208160-57268899 protein_coding
ENST00000413566 (EXOC5-201) 57202483-57268899 protein_coding
ENST00000554011 (EXOC5-004) 57206794-57232372 retained_intron
ENST00000554598 (EXOC5-008) 57239528-57268823 retained_intron
ENST00000554934 (EXOC5-010) 57232140-57233223 processed_transcript
ENST00000555148 (EXOC5-003) 57208545-57268837 nonsense_mediated_decay
ENST00000555749 (EXOC5-005) 57244113-57268725 retained_intron
ENST00000556318 (EXOC5-006) 57244279-57268440 protein_coding
ENST00000556629 (EXOC5-009) 57231571-57237506 retained_intron
ENST00000556911 (EXOC5-007) 57243248-57247643 processed_transcript
ENST00000621441 (EXOC5-001) 57200507-57269008 protein_coding
ENSG00000165588 (OTX2)
orthodenticle homeobox 2 		ENST00000339475 (OTX2-001) 56799905-56810469 protein_coding
ENST00000408990 (OTX2-007) 56801730-56805663 protein_coding
ENST00000554559 (OTX2-004) 56802025-56810479 protein_coding
ENST00000554788 (OTX2-005) 56801810-56805648 protein_coding
ENST00000554845 (OTX2-006) 56801913-56805648 protein_coding
ENST00000555006 (OTX2-002) 56801735-56810448 protein_coding
ENST00000555804 (OTX2-003) 56802115-56810479 protein_coding
ENSG00000243388 (RPL3P3)
ribosomal protein L3 pseudogene 3 		ENST00000467870 (RPL3P3-001) 56978409-56979621 processed_pseudogene
ENSG00000243801 (RN7SL461P)
RNA, 7SL, cytoplasmic 461, pseudogene 		ENST00000484915 (RN7SL461P-201) 56824375-56824656 misc_RNA
ENSG00000248550 (OTX2-AS1)
OTX2 antisense RNA 1 (head to head) 		ENST00000534909 (OTX2-AS1-001) 56813183-56930833 lincRNA
ENST00000554358 (OTX2-AS1-003) 56813291-56929039 lincRNA
ENST00000554428 (OTX2-AS1-004) 56813233-56919792 lincRNA
ENST00000554725 (OTX2-AS1-002) 56813271-57152177 lincRNA
ENSG00000258592 (RP11-108M12.3)
 ENST00000551408 (RP11-108M12.3-002) 57067008-57112660 lincRNA
ENST00000554160 (RP11-108M12.3-001) 57066260-57068542 lincRNA
ENSG00000258758 (RP11-613G13.1)
 ENST00000556703 (RP11-613G13.1-001) 57040885-57042504 processed_pseudogene
ENSG00000259136 (RP11-108M12.2)
 ENST00000555786 (RP11-108M12.2-001) 57044646-57044960 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0005ZZ_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000021848-ENSMUSG00000061244 CGP 10090 14:48657679-49066653
GeneTranscriptPositionBiotype
ENSMUSG00000021848 (Otx2)
orthodenticle homolog 2 		ENSMUST00000118578 (Otx2-001) 48657679-48665246 protein_coding
ENSMUST00000119070 (Otx2-002) 48658171-48667513 protein_coding
ENSMUST00000119739 (Otx2-008) 48661408-48665521 protein_coding
ENSMUST00000122009 (Otx2-003) 48658171-48662872 protein_coding
ENSMUST00000133479 (Otx2-006) 48661358-48667508 protein_coding
ENSMUST00000135279 (Otx2-005) 48658916-48661932 protein_coding
ENSMUST00000144465 (Otx2-007) 48659305-48667508 protein_coding
ENSMUST00000152018 (Otx2-004) 48658953-48667644 protein_coding
ENSMUSG00000036291 (Ap5m1)
adaptor-related protein complex 5, mu 1 subunit 		ENSMUST00000037473 (Ap5m1-201) 49066495-49087723 protein_coding
ENSMUSG00000093117 (Gm22699)
predicted gene, 22699 		ENSMUST00000175376 (Gm22699-201) 48769354-48769458 snRNA
ENSMUSG00000098682 (Otx2os1)
orthodenticle homolog 2 opposite strand 1 		ENSMUST00000183522 (Otx2os1-002) 48670159-48719823 lincRNA
ENSMUST00000183803 (Otx2os1-001) 48669288-48793348 lincRNA
ENSMUST00000184869 (Otx2os1-003) 48670262-48717762 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005ZZ_0001ENSDARG00000011235ENSDART00000008816ENSDART00000126097ENSDART00000156648ENSDARG00000060323ENSDART00000130198ENSDART00000148786ENSDARG00000097410ENSDART00000153511ENSDARG00000097731ENSDART00000156631CIL_0005ZZ_0002ENSG00000053770ENST00000261558ENST00000431972ENST00000554213ENST00000554863ENST00000554931ENST00000555448ENST00000556377ENST00000556723ENST00000556995ENSG00000070367ENST00000340918ENST00000413566ENST00000554011ENST00000554598ENST00000554934ENST00000555148ENST00000555749ENST00000556318ENST00000556629ENST00000556911ENST00000621441ENSG00000165588ENST00000339475ENST00000408990ENST00000554559ENST00000554788ENST00000554845ENST00000555006ENST00000555804ENSG00000243388ENST00000467870ENSG00000243801ENST00000484915ENSG00000248550ENST00000534909ENST00000554358ENST00000554428ENST00000554725ENSG00000258592ENST00000551408ENST00000554160ENSG00000258758ENST00000556703ENSG00000259136ENST00000555786CIL_0005ZZ_0003ENSMUSG00000021848ENSMUST00000118578ENSMUST00000119070ENSMUST00000119739ENSMUST00000122009ENSMUST00000133479ENSMUST00000135279ENSMUST00000144465ENSMUST00000152018ENSMUSG00000036291ENSMUST00000037473ENSMUSG00000093117ENSMUST00000175376ENSMUSG00000098682ENSMUST00000183522ENSMUST00000183803ENSMUST00000184869
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005ZZ_0001ENSDARG00000011235ENSDART00000008816ENSDART00000126097ENSDARG00000060323ENSDART00000130198ENSDART00000148786ENSDARG00000097410ENSDART00000153511ENSDARG00000097731ENSDART00000156631CIL_0005ZZ_0002ENSG00000053770ENST00000261558ENST00000431972ENST00000554931ENSG00000070367ENST00000340918ENST00000413566ENST00000554011ENST00000554598ENST00000555148ENST00000555749ENST00000621441ENSG00000165588ENST00000339475ENST00000408990ENST00000554559ENST00000555006ENSG00000243388ENST00000467870ENSG00000243801ENST00000484915ENSG00000248550ENST00000534909ENST00000554725ENSG00000258592ENST00000551408ENST00000554160ENSG00000258758ENST00000556703ENSG00000259136ENST00000555786CIL_0005ZZ_0003ENSMUSG00000021848ENSMUST00000118578ENSMUST00000119070ENSMUST00000119739ENSMUST00000122009ENSMUST00000135279ENSMUSG00000036291ENSMUST00000037473ENSMUSG00000093117ENSMUST00000175376ENSMUSG00000098682ENSMUST00000183522ENSMUST00000183803
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000011235 ENSDART00000008816 N/A N/A N/A 7.611±5.09 N/A N/A 0.077±0.00 N/A 0.022±0.00 N/A 0.791±0.00 N/A N/A N/A
ENSDART00000126097 N/A N/A N/A 6.587±3.84 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000156648 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000060323 ENSDART00000130198 N/A N/A N/A 4.946±1.98 N/A N/A 1.150±0.97 0.917±0.45 0.931±0.00 N/A 2.243±0.00 N/A N/A N/A
ENSDART00000148786 N/A N/A N/A 1.656±0.21 N/A N/A 0.412±0.00 2.509±0.00 0.890±0.00 N/A N/A N/A N/A N/A
ENSDARG00000097410 ENSDART00000153511 N/A N/A N/A N/A N/A N/A N/A 0.120±0.00 N/A N/A N/A N/A N/A N/A
ENSDARG00000097731 ENSDART00000156631 N/A N/A N/A 4.184±0.00 N/A N/A N/A 0.541±0.17 N/A N/A 0.295±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000053770 ENST00000261558 0.807±0.00 1.271±0.00 1.586±0.00 3.534±0.07 1.163±0.13 1.765±0.71 1.372±0.44 3.270±0.00 0.973±0.03 1.273±0.00 0.641±0.23 1.568±0.26 0.784±0.12 1.811±0.00
ENST00000431972 N/A N/A N/A N/A N/A N/A N/A 11.285±0.00 N/A N/A N/A N/A 2.962±0.00 N/A
ENST00000554213 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554863 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554931 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.080±0.00 N/A N/A N/A
ENST00000555448 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556377 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556723 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556995 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000070367 ENST00000340918 N/A N/A 4.006±0.00 N/A 3.629±0.00 4.931±0.00 N/A N/A N/A N/A N/A N/A 4.066±0.00 22.295±0.00
ENST00000413566 2.089±0.00 1.080±0.00 N/A N/A 1.536±0.33 2.378±0.00 1.501±0.00 1.502±0.00 0.946±0.23 2.690±0.55 1.072±0.00 1.713±0.67 0.752±0.09 3.030±0.00
ENST00000554011 5.290±0.00 2.623±0.00 N/A 6.815±0.16 5.503±0.51 5.873±0.87 2.199±0.00 3.182±0.68 2.245±0.90 5.937±1.86 2.538±1.35 4.448±1.15 3.401±0.76 15.134±2.24
ENST00000554598 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.788±0.00 N/A N/A N/A
ENST00000554934 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555148 5.509±0.00 N/A N/A N/A 5.339±0.56 5.477±0.00 3.338±0.00 2.734±0.00 6.224±0.00 5.500±0.00 0.918±0.00 6.793±0.00 N/A N/A
ENST00000555749 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.875±0.00 68.521±0.00
ENST00000556318 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556629 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556911 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000621441 N/A 1.198±0.00 1.288±0.00 2.353±0.50 0.824±0.00 N/A 0.684±0.00 1.423±0.00 1.107±0.51 N/A N/A 1.438±0.55 1.072±0.29 N/A
ENSG00000165588 ENST00000339475 0.011±0.00 N/A N/A N/A 0.011±0.00 N/A N/A N/A N/A N/A N/A 0.009±0.00 0.015±0.00 0.184±0.00
ENST00000408990 N/A N/A N/A 0.756±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554559 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.056±0.00 N/A
ENST00000554788 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554845 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555006 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.139±0.00
ENST00000555804 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000243388 ENST00000467870 0.180±0.00 0.151±0.00 N/A 0.049±0.00 0.112±0.00 0.189±0.00 0.041±0.00 0.093±0.00 0.014±0.00 0.185±0.00 0.026±0.00 0.017±0.00 N/A 0.082±0.00
ENSG00000243801 ENST00000484915 0.065±0.00 1.282±0.00 N/A 0.473±0.00 0.681±0.00 0.547±0.00 0.131±0.00 0.520±0.00 0.514±0.00 0.361±0.00 N/A 2.197±0.00 N/A 0.453±0.00
ENSG00000248550 ENST00000534909 0.165±0.00 0.277±0.00 N/A 0.244±0.00 0.226±0.00 0.119±0.00 0.022±0.00 0.111±0.00 0.050±0.00 0.118±0.00 0.080±0.00 0.016±0.00 N/A 0.207±0.00
ENST00000554358 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554428 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554725 N/A N/A N/A N/A N/A N/A N/A 0.086±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000258592 ENST00000551408 0.117±0.00 0.080±0.00 N/A 0.195±0.00 N/A N/A 0.111±0.07 0.086±0.00 0.108±0.00 0.260±0.00 N/A 0.329±0.24 0.459±0.25 1.450±1.24
ENST00000554160 N/A N/A N/A N/A N/A N/A 0.026±0.00 N/A N/A N/A N/A 0.050±0.00 0.031±0.00 0.021±0.00
ENSG00000258758 ENST00000556703 N/A N/A N/A N/A N/A N/A N/A N/A 0.006±0.00 N/A N/A 0.016±0.00 N/A 0.032±0.01
ENSG00000259136 ENST00000555786 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.055±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021848 ENSMUST00000118578 N/A N/A N/A 3.496±2.63 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.016±0.00
ENSMUST00000119070 N/A N/A N/A 3.471±2.22 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.020±0.00
ENSMUST00000119739 N/A N/A N/A N/A N/A N/A N/A N/A 0.030±0.00 N/A N/A N/A N/A N/A
ENSMUST00000122009 N/A N/A N/A N/A N/A N/A N/A N/A 0.019±0.00 N/A N/A N/A N/A N/A
ENSMUST00000133479 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135279 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.107±0.00
ENSMUST00000144465 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152018 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000036291 ENSMUST00000037473 6.014±1.64 8.096±1.63 3.365±0.00 2.063±0.00 6.956±0.76 8.346±0.35 3.774±0.29 8.185±2.09 4.437±0.80 6.213±1.37 2.237±0.43 6.376±1.65 4.591±1.17 3.248±0.26
ENSMUSG00000093117 ENSMUST00000175376 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2241.750±0.00
ENSMUSG00000098682 ENSMUST00000183522 N/A N/A N/A 1.064±0.03 N/A N/A N/A N/A 0.012±0.00 N/A N/A N/A N/A N/A
ENSMUST00000183803 N/A N/A N/A 0.401±0.33 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000184869 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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