C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glycerophosphodiester phosphodiesterase domain containing 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000037528 Gdpd5-201 ENSMUSG00000035314 10090 + 7:99381549-99460983 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000037528
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000037528 7.633±0.96 5.068±0.96 7.923±0.31 13.066±7.00 3.549±1.39 3.580±0.35 7.036±0.39 2.541±0.38 0.472±0.27 6.707±1.19 1.353±0.53 7.717±2.86 10.769±8.57 1.970±0.92

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008NG CIL_0008NG_0002 VISTA 7:99059661-99661402
CIL_0002ZX CIL_0002ZX_0002 CGP 7:99345375-99460983

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IEA cytoplasm
GO:0006071 IEA glycerol metabolic process
GO:0006629 IEA lipid metabolic process
GO:0008889 IEA glycerophosphodiester phosphodiesterase activity
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0021522 IMP spinal cord motor neuron differentiation
GO:0021895 IMP cerebral cortex neuron differentiation
GO:0031175 IMP neuron projection development
GO:0042995 IEA cell projection
GO:0045666 IMP positive regulation of neuron differentiation
GO:0045746 IMP negative regulation of Notch signaling pathway
GO:0048505 IMP regulation of timing of cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000336898 GDPD5-001 protein_coding Homo_sapiens 0 2250
ENST00000443276 GDPD5-201 protein_coding Homo_sapiens 0 1670
ENST00000526177 GDPD5-007 protein_coding Homo_sapiens 0 1666
ENST00000527322 GDPD5-006 processed_transcript Homo_sapiens 0 492
ENST00000527820 GDPD5-005 nonsense_mediated_decay Homo_sapiens 0 1670
ENST00000528031 GDPD5-012 retained_intron Homo_sapiens 0 523
ENST00000529721 GDPD5-003 protein_coding Homo_sapiens 0 2185
ENST00000531561 GDPD5-014 retained_intron Homo_sapiens 0 370
ENST00000531759 GDPD5-009 retained_intron Homo_sapiens 0 294
ENST00000533784 GDPD5-004 protein_coding Homo_sapiens 0 1520
ENST00000533805 GDPD5-008 protein_coding Homo_sapiens 0 1282
ENST00000533911 GDPD5-013 processed_transcript Homo_sapiens 0 566
ENST00000534322 GDPD5-015 protein_coding Homo_sapiens 0 549

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