C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Meckel syndrome, type 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000038196 Mks1-001 ENSMUSG00000034121 10090 + 11:87853215-87863803 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000038196
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000038196 2.995±0.58 2.987±0.83 3.177±0.41 3.290±2.32 2.334±0.33 2.294±0.44 1.021±0.37 2.590±0.46 0.859±0.37 1.747±0.77 0.809±0.35 3.200±0.91 2.356±0.93 5.755±2.86

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005813 IEA centrosome
GO:0005814 IDA centriole
GO:0016020 IDA membrane
GO:0035869 IMP ciliary transition zone
GO:0036038 IDA TCTN-B9D complex
GO:0036064 IEA ciliary basal body
GO:0042384 IMP cilium assembly
GO:0048754 IMP branching morphogenesis of an epithelial tube
GO:0060271 IMP cilium morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000313863 MKS1-002 protein_coding Homo_sapiens 0 1400
ENST00000393119 MKS1-003 protein_coding Homo_sapiens 0 1899
ENST00000393120 MKS1-004 nonsense_mediated_decay Homo_sapiens 0 1273
ENST00000537529 MKS1-001 protein_coding Homo_sapiens 0 1746
ENST00000577315 MKS1-011 protein_coding Homo_sapiens 0 396
ENST00000577824 MKS1-012 protein_coding Homo_sapiens 0 584
ENST00000578789 MKS1-005 nonsense_mediated_decay Homo_sapiens 3e-31 139
ENST00000579358 MKS1-009 retained_intron Homo_sapiens 0 193
ENST00000580127 MKS1-008 nonsense_mediated_decay Homo_sapiens 0 538
ENST00000581180 MKS1-006 retained_intron Homo_sapiens 0 494
ENST00000581761 MKS1-007 nonsense_mediated_decay Homo_sapiens 0 616
ENST00000582328 LPO-006 protein_coding Homo_sapiens 2e-34 152
ENST00000583577 MKS1-013 retained_intron Homo_sapiens 0 335
ENST00000585134 MKS1-010 protein_coding Homo_sapiens 0 597

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