C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal RNA processing 12 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000038677 Rrp12-201 ENSMUSG00000035049 10090 - 19:41862852-41896153 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000038677
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000038677 2.051±0.36 2.495±1.41 2.127±0.23 5.091±1.10 1.577±1.15 1.070±0.88 1.324±0.20 1.127±0.64 3.039±2.33 1.104±0.46 5.721±1.30 2.318±1.45 8.875±5.49 12.908±3.40

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004I4 CIL_0004I4_0002 CGP 19:41845978-41896153

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005730 IEA nucleolus
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000315563 RRP12-008 protein_coding Homo_sapiens 0 3443
ENST00000370992 RRP12-201 protein_coding Homo_sapiens 0 4381
ENST00000414986 RRP12-202 protein_coding Homo_sapiens 0 3598
ENST00000439965 RRP12-014 protein_coding Homo_sapiens 0 274
ENST00000479317 RRP12-003 retained_intron Homo_sapiens 0 233
ENST00000479481 RRP12-001 processed_transcript Homo_sapiens 0 1581
ENST00000487612 RRP12-006 protein_coding Homo_sapiens 0 292
ENST00000490815 RRP12-004 processed_transcript Homo_sapiens 0 595
ENST00000491313 RRP12-002 retained_intron Homo_sapiens 0 942
ENST00000536831 RRP12-007 protein_coding Homo_sapiens 0 4381
ENST00000618765 RRP12-011 protein_coding Homo_sapiens 0 662
ENST00000622320 RRP12-013 protein_coding Homo_sapiens 7e-37 158

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