C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SH3 and PX domains 2B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000038753 Sh3pxd2b-001 ENSMUSG00000040711 10090 + 11:32347820-32428173 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000038753
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000038753 15.313±6.52 1.902±0.24 4.715±1.38 10.829±7.33 9.757±2.68 3.459±0.32 1.305±0.23 1.241±0.40 0.373±0.29 4.216±0.75 0.441±0.29 11.792±3.09 2.012±1.08 0.079±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00094P CIL_00094P_0002 VISTA 11:31945270-32546411
CIL_0008HK CIL_0008HK_0002 VISTA 11:31950452-32552344

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 IMP skeletal system development
GO:0001654 IMP eye development
GO:0002102 IDA podosome
GO:0005737 IDA cytoplasm
GO:0006801 ISS superoxide metabolic process
GO:0007507 IMP heart development
GO:0010314 IDA phosphatidylinositol-5-phosphate binding
GO:0022617 IEA extracellular matrix disassembly
GO:0030054 IEA cell junction
GO:0030154 IEA cell differentiation
GO:0032266 IMP phosphatidylinositol-3-phosphate binding
GO:0042169 IDA SH2 domain binding
GO:0042995 IEA cell projection
GO:0045600 IMP positive regulation of fat cell differentiation
GO:0060348 IMP bone development
GO:0060612 IMP adipose tissue development
GO:0070273 IDA phosphatidylinositol-4-phosphate binding
GO:0071800 IMP podosome assembly
GO:0072657 ISS protein localization to membrane
GO:0080025 IDA phosphatidylinositol-3,5-bisphosphate binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000151368 sh3pxd2b-001 protein_coding Danio_rerio 0 357
ENSDART00000031308 sh3pxd2b-003 protein_coding Danio_rerio 0 219
ENST00000311601 SH3PXD2B-001 protein_coding Homo_sapiens 0 2920
ENST00000518522 SH3PXD2B-004 protein_coding Homo_sapiens 0 289
ENST00000519643 SH3PXD2B-002 protein_coding Homo_sapiens 0 1602

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