C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SH3 and PX domains 2B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000311601 SH3PXD2B-001 ENSG00000174705 9606 - 5:172333499-172454523 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000311601
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000311601 21.062±0.00 5.632±0.00 0.337±0.00 4.540±3.79 3.782±1.87 7.030±0.00 1.571±1.33 1.482±1.02 2.112±1.28 3.653±2.86 0.651±0.31 9.335±6.89 6.702±1.47 5.682±3.47

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 IMP skeletal system development
GO:0001654 IMP eye development
GO:0002102 ISS podosome
GO:0005515 IPI:IEA protein binding
GO:0005737 ISS cytoplasm
GO:0006801 IDA superoxide metabolic process
GO:0007507 IMP heart development
GO:0010314 ISS phosphatidylinositol-5-phosphate binding
GO:0022617 IMP extracellular matrix disassembly
GO:0030054 IEA cell junction
GO:0030154 IEA cell differentiation
GO:0032266 ISS phosphatidylinositol-3-phosphate binding
GO:0035091 IEA phosphatidylinositol binding
GO:0042169 ISS SH2 domain binding
GO:0042995 IEA cell projection
GO:0045600 IEA positive regulation of fat cell differentiation
GO:0060348 IMP bone development
GO:0060612 ISS adipose tissue development
GO:0070273 IEA phosphatidylinositol-4-phosphate binding
GO:0071800 ISS podosome assembly
GO:0072657 IDA protein localization to membrane
GO:0080025 ISS phosphatidylinositol-3,5-bisphosphate binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000038753 Sh3pxd2b-001 protein_coding Mus_musculus 0 2920
ENSMUST00000138771 Sh3pxd2b-002 retained_intron Mus_musculus 0 457

Loading