C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: trophinin associated protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000039665 Troap-201 ENSMUSG00000032783 10090 + 15:99074973-99083407 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000039665
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000039665 0.263±0.11 0.733±0.20 0.371±0.00 2.443±1.93 0.324±0.21 1.528±0.60 0.049±0.01 0.113±0.02 4.808±3.20 0.171±0.08 0.030±0.02 2.571±1.14 2.783±1.67 2.878±0.41

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00009Q CIL_00009Q_0002 CGP 15:99055174-99083407
CIL_0001M2 CIL_0001M2_0002 CGP 15:99074973-99087817

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005575 ND cellular_component
GO:0005737 IEA cytoplasm
GO:0007155 IEA cell adhesion
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000257909 TROAP-001 protein_coding Homo_sapiens 0 399
ENST00000546735 TROAP-006 nonsense_mediated_decay Homo_sapiens 0 281
ENST00000546776 TROAP-011 nonsense_mediated_decay Homo_sapiens 0 281
ENST00000547807 TROAP-016 protein_coding Homo_sapiens 0 398
ENST00000548817 TROAP-012 retained_intron Homo_sapiens 0 283
ENST00000549891 TROAP-004 nonsense_mediated_decay Homo_sapiens 0.00000000000002 84
ENST00000551192 TROAP-007 nonsense_mediated_decay Homo_sapiens 0 202
ENST00000551245 TROAP-003 protein_coding Homo_sapiens 0 399

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