C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00009Q_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000135406-ENSG00000135451 CGP 9606 12:49293252-49331731
GeneTranscriptPositionBiotype
ENSG00000135406 (PRPH)
peripherin 		ENST00000257860 (PRPH-001) 49293702-49298686 protein_coding
ENST00000451891 (PRPH-002) 49295362-49297238 protein_coding
ENST00000530631 (PRPH-003) 49297121-49298648 retained_intron
ENST00000532332 (PRPH-004) 49297002-49298592 protein_coding
ENST00000533401 (PRPH-006) 49295751-49297424 retained_intron
ENST00000537252 (PRPH-007) 49295766-49296890 retained_intron
ENST00000551194 (PRPH-008) 49293252-49293997 processed_transcript
ENSG00000135451 (TROAP)
trophinin associated protein 		ENST00000257909 (TROAP-001) 49323279-49331731 protein_coding
ENST00000380327 (TROAP-002) 49323255-49324392 protein_coding
ENST00000546735 (TROAP-006) 49323257-49329598 nonsense_mediated_decay
ENST00000546776 (TROAP-011) 49323279-49329061 nonsense_mediated_decay
ENST00000547807 (TROAP-016) 49323310-49327327 protein_coding
ENST00000547923 (TROAP-008) 49326641-49331708 protein_coding
ENST00000548311 (TROAP-005) 49323255-49324416 protein_coding
ENST00000548817 (TROAP-012) 49325453-49326720 retained_intron
ENST00000549275 (TROAP-013) 49323236-49324296 protein_coding
ENST00000549534 (TROAP-010) 49323273-49324365 protein_coding
ENST00000549891 (TROAP-004) 49323255-49329634 nonsense_mediated_decay
ENST00000550346 (TROAP-015) 49323256-49327331 protein_coding
ENST00000550709 (TROAP-009) 49323257-49324380 protein_coding
ENST00000551192 (TROAP-007) 49323283-49329785 nonsense_mediated_decay
ENST00000551245 (TROAP-003) 49323244-49331670 protein_coding
ENST00000551567 (TROAP-014) 49323374-49325505 protein_coding
ENSG00000258334 (RP11-161H23.9)
 ENST00000553259 (RP11-161H23.9-001) 49292631-49324576 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_00009Q_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000023484-ENSMUSG00000032783 CGP 10090 15:99055174-99083407
GeneTranscriptPositionBiotype
ENSMUSG00000023484 (Prph)
peripherin 		ENSMUST00000024249 (Prph-201) 99055174-99058978 protein_coding
ENSMUST00000047104 (Prph-202) 99055174-99058978 protein_coding
ENSMUSG00000032783 (Troap)
trophinin associated protein 		ENSMUST00000039665 (Troap-201) 99074973-99083407 protein_coding

Mus musculus Ensembl (GRCm38)

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Structures from Ensembl
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Transcripts
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00009Q_0001ENSG00000135406ENST00000257860ENST00000451891ENST00000530631ENST00000532332ENST00000533401ENST00000537252ENST00000551194ENSG00000135451ENST00000257909ENST00000380327ENST00000546735ENST00000546776ENST00000547807ENST00000547923ENST00000548311ENST00000548817ENST00000549275ENST00000549534ENST00000549891ENST00000550346ENST00000550709ENST00000551192ENST00000551245ENST00000551567ENSG00000258334ENST00000553259CIL_00009Q_0002ENSMUSG00000023484ENSMUST00000024249ENSMUST00000047104ENSMUSG00000032783ENSMUST00000039665
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00009Q_0001ENSG00000135406ENST00000257860ENST00000451891ENST00000530631ENST00000532332ENST00000533401ENSG00000135451ENST00000257909ENST00000380327ENST00000547923ENST00000548311ENST00000549275ENST00000549534ENST00000549891ENST00000551192ENST00000551245ENST00000551567ENSG00000258334ENST00000553259CIL_00009Q_0002ENSMUSG00000023484ENSMUST00000024249ENSMUST00000047104ENSMUSG00000032783ENSMUST00000039665
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000135406 ENST00000257860 0.214±0.00 0.326±0.00 N/A N/A 0.274±0.00 2.776±0.00 0.046±0.00 N/A 0.044±0.03 N/A N/A 1.076±0.00 N/A N/A
ENST00000451891 1.543±0.00 N/A N/A 0.334±0.21 1.697±0.12 N/A N/A N/A 0.215±0.00 N/A 0.279±0.00 N/A N/A 28.016±0.00
ENST00000530631 1.437±0.00 1.656±0.00 N/A 0.845±0.00 1.268±0.00 1.720±0.00 N/A N/A N/A 1.155±0.00 N/A N/A N/A 19.928±0.29
ENST00000532332 N/A N/A N/A N/A 0.618±0.00 N/A N/A 0.305±0.00 N/A N/A N/A N/A N/A N/A
ENST00000533401 N/A N/A N/A N/A N/A 0.670±0.00 N/A N/A N/A N/A N/A N/A N/A 13.118±0.00
ENST00000537252 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551194 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000135451 ENST00000257909 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.303±0.00 N/A 4.557±3.69 0.618±0.23 6.376±1.76
ENST00000380327 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.410±0.00 1.217±0.00 N/A
ENST00000546735 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000546776 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000547807 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000547923 N/A N/A 0.312±0.00 N/A 0.375±0.00 N/A N/A 0.055±0.00 N/A N/A 0.053±0.00 N/A N/A N/A
ENST00000548311 0.641±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.109±0.92 N/A
ENST00000548817 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000549275 N/A N/A N/A N/A 2.727±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000549534 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.100±0.00 N/A N/A N/A N/A
ENST00000549891 N/A N/A N/A N/A N/A N/A N/A 0.293±0.00 N/A N/A N/A N/A 0.677±0.00 N/A
ENST00000550346 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550709 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551192 N/A 0.751±0.00 N/A N/A N/A N/A 0.263±0.00 N/A 0.149±0.00 N/A N/A N/A N/A N/A
ENST00000551245 N/A 0.286±0.00 N/A N/A N/A N/A N/A N/A 0.018±0.00 N/A N/A 2.266±1.50 0.212±0.06 N/A
ENST00000551567 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.429±0.00 N/A
ENSG00000258334 ENST00000553259 N/A N/A N/A N/A N/A N/A N/A 0.035±0.00 N/A 0.170±0.15 N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000023484 ENSMUST00000024249 0.104±0.02 2.187±1.68 2.277±0.42 7.179±4.60 0.211±0.10 6.172±1.03 0.325±0.13 1.090±0.48 0.126±0.08 0.333±0.10 0.178±0.08 1.583±0.68 1.676±2.44 0.135±0.05
ENSMUST00000047104 N/A N/A N/A 1.294±0.52 0.150±0.00 1.298±0.23 0.264±0.17 N/A N/A 0.218±0.00 0.212±0.04 0.699±0.28 2.045±2.03 0.089±0.00
ENSMUSG00000032783 ENSMUST00000039665 0.263±0.11 0.733±0.20 0.371±0.00 2.443±1.93 0.324±0.21 1.528±0.60 0.049±0.01 0.113±0.02 4.808±3.20 0.171±0.08 0.030±0.02 2.571±1.14 2.783±1.67 2.878±0.41

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