C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ciliary rootlet coiled-coil, rootletin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000040222 Crocc-201 ENSMUSG00000040860 10090 - 4:141016640-141053661 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartENSMUST00000040222
Transcript ID Brain Breast Heart
ENSMUST00000040222 3.496±0.00 0.039±0.00 0.239±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003WS CIL_0003WS_0002 CGP 4:141010418-141060550

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IDA structural molecule activity
GO:0005814 IDA centriole
GO:0007049 IEA cell cycle
GO:0019894 IPI kinesin binding
GO:0030030 IEA cell projection organization
GO:0035253 IDA ciliary rootlet
GO:0051297 ISS centrosome organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000263511 CROCCP3-002 processed_transcript Homo_sapiens 0 966
ENST00000375541 CROCC-001 protein_coding Homo_sapiens 0 4951
ENST00000420820 CROCCP3-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 1280
ENST00000426910 CROCCP1-001 processed_pseudogene Homo_sapiens 0 3509
ENST00000445545 CROCC-002 protein_coding Homo_sapiens 0 3705
ENST00000457096 CROCCP4-001 unprocessed_pseudogene Homo_sapiens 0 263
ENST00000465021 CROCC-014 processed_transcript Homo_sapiens 0 532
ENST00000466256 CROCC-003 processed_transcript Homo_sapiens 0 261
ENST00000467938 CROCC-004 protein_coding Homo_sapiens 0 1705
ENST00000477773 CROCC-013 processed_transcript Homo_sapiens 0 424
ENST00000486318 CROCC-011 processed_transcript Homo_sapiens 0 566
ENST00000492631 CROCC-005 processed_transcript Homo_sapiens 0 684
ENST00000494191 CROCC-006 retained_intron Homo_sapiens 0 601
ENST00000591316 CROCCP3-004 retained_intron Homo_sapiens 0 207
ENST00000591348 CROCCP3-003 processed_transcript Homo_sapiens 0 606

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