C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transient receptor potential cation channel, subfamily M, member 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000040489 Trpm6-201 ENSMUSG00000024727 10090 + 19:18749983-18892510 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000040489
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000040489 0.239±0.11 0.049±0.00 0.047±0.00 0.053±0.02 0.114±0.05 3.598±2.76 0.048±0.03 0.517±0.28 0.040±0.04 2.316±0.45 0.070±0.02 1.614±1.24 2.353±1.49 0.936±0.07

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004674 IEA protein serine/threonine kinase activity
GO:0005261 IDA cation channel activity
GO:0005262 IEA calcium channel activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0006468 IEA protein phosphorylation
GO:0009636 IEA response to toxic substance
GO:0016021 IEA integral component of membrane
GO:0016324 IDA apical plasma membrane
GO:0030001 IDA metal ion transport
GO:0031526 IDA brush border membrane
GO:0046872 IEA metal ion binding
GO:0070588 IEA calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000088033 trpm3-201 protein_coding Danio_rerio 2e-27 130
ENSDART00000147188 trpm3-001 protein_coding Danio_rerio 2e-27 130
ENST00000359047 TRPM6-002 protein_coding Homo_sapiens 0 763
ENST00000360774 TRPM6-001 protein_coding Homo_sapiens 0 2206
ENST00000361255 TRPM6-201 protein_coding Homo_sapiens 0 2206
ENST00000449912 TRPM6-202 protein_coding Homo_sapiens 0 2206
ENST00000483186 TRPM6-004 processed_transcript Homo_sapiens 0 551

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