C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transient receptor potential cation channel, subfamily M, member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000088033 trpm3-201 ENSDARG00000039181 7955 + 5:27596889-27707872 protein_coding

Danio rerio EnsemblZv9

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartLiverMuscleENSDART00000088033
Transcript ID Brain Heart Liver Muscle
ENSDART00000088033 1.787±0.00 0.019±0.00 0.015±0.00 0.391±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000J9 CIL_0000J9_0001 CGP 5:27410071-27707881
CIL_0005JD CIL_0005JD_0001 CGP 5:27596889-27722714

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005216 IEA ion channel activity
GO:0006810 IEA transport
GO:0006811 IEA ion transport
GO:0016020 IEA membrane
GO:0016021 IEA integral to membrane
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000040489 Trpm6-201 protein_coding Mus_musculus 2e-27 130
ENSMUST00000085222 Trpm1-003 protein_coding Mus_musculus 0 298
ENSMUST00000107519 Trpm1-005 protein_coding Mus_musculus 0 298
ENSMUST00000107525 Trpm1-001 protein_coding Mus_musculus 0 298
ENST00000360774 TRPM6-001 protein_coding Homo_sapiens 1e-39 171
ENST00000361255 TRPM6-201 protein_coding Homo_sapiens 1e-39 171
ENST00000449912 TRPM6-202 protein_coding Homo_sapiens 1e-39 171

Loading