C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: basic leucine zipper transcription factor, ATF-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000040536 Batf-001 ENSMUSG00000034266 10090 + 12:85686669-85709087 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000040536
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000040536 1.930±1.15 0.468±0.37 1.846±0.32 0.368±0.04 4.255±2.13 0.858±0.33 0.538±0.19 0.687±0.16 1.544±1.33 3.759±0.73 0.158±0.10 1.614±0.42 0.665±0.26 0.401±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00084S CIL_00084S_0002 VISTA 12:85135374-85736988
CIL_00085H CIL_00085H_0002 VISTA 12:85154385-85756659
CIL_0007PT CIL_0007PT_0002 VISTA 12:85154400-85756289
CIL_00000N CIL_00000N_0002 CGP 12:85599105-85709087
CIL_00024S CIL_00024S_0002 CGP 12:85686669-85813585

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001816 IMP cytokine production
GO:0002320 IMP lymphoid progenitor cell differentiation
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006974 IMP cellular response to DNA damage stimulus
GO:0030330 IMP DNA damage response, signal transduction by p53 class mediator
GO:0042832 IMP defense response to protozoan
GO:0043011 IMP myeloid dendritic cell differentiation
GO:0043565 IDA sequence-specific DNA binding
GO:0045064 IMP T-helper 2 cell differentiation
GO:0045190 IMP isotype switching
GO:0060218 IMP hematopoietic stem cell differentiation
GO:0072539 IMP T-helper 17 cell differentiation
GO:0072540 IMP T-helper 17 cell lineage commitment

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000286639 BATF-001 protein_coding Homo_sapiens 0 684
ENST00000555504 BATF-003 protein_coding Homo_sapiens 0 313

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