C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synapse defective 1, Rho GTPase, homolog 1 (C. elegans)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000040580 Syde1-201 ENSMUSG00000032714 10090 - 10:78584503-78591964 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000040580
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000040580 16.272±1.24 26.250±5.09 9.976±1.71 2.433±1.32 11.438±4.81 4.644±2.02 4.411±0.93 9.494±2.61 1.259±0.23 29.686±2.29 1.101±0.38 16.117±5.64 12.116±6.45 0.724±0.09

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005096 IDA GTPase activator activity
GO:0005515 IPI protein binding
GO:0005829 IDA cytosol
GO:0007130 IMP synaptonemal complex assembly
GO:0007165 IEA signal transduction
GO:0016081 IMP synaptic vesicle docking involved in exocytosis
GO:0032403 IDA protein complex binding
GO:0043547 IDA positive regulation of GTPase activity
GO:0044300 IDA cerebellar mossy fiber
GO:0050806 IMP positive regulation of synaptic transmission
GO:0097060 IDA synaptic membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000342784 SYDE1-001 protein_coding Homo_sapiens 0 1947
ENST00000597977 SYDE1-004 protein_coding Homo_sapiens 0 409
ENST00000600252 SYDE1-003 protein_coding Homo_sapiens 0 285
ENST00000600440 SYDE1-002 protein_coding Homo_sapiens 0 244

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