C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synapse defective 1, Rho GTPase, homolog 1 (C. elegans)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000600440 SYDE1-002 ENSG00000105137 9606 + 19:15107405-15114985 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalColonHeartKidneyLungOvaryPlacentaTestisENST00000600440
Transcript ID Adipose Adrenal Colon Heart Kidney Lung Ovary Placenta Testis
ENST00000600440 6.670±0.00 14.121±0.00 9.240±0.00 0.509±0.00 6.408±0.00 5.991±0.00 9.488±0.00 17.952±3.67 7.355±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005100 ISS Rho GTPase activator activity
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0005829 TAS cytosol
GO:0007165 IEA signal transduction
GO:0007264 TAS small GTPase mediated signal transduction
GO:0032862 ISS activation of Rho GTPase activity
GO:0051056 TAS regulation of small GTPase mediated signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000040580 Syde1-201 protein_coding Mus_musculus 0 244
ENSDART00000114996 SYDE1-201 protein_coding Danio_rerio 0.000000000003 79
ENSDART00000113956 SYDE2-201 protein_coding Danio_rerio 0.000000000003 79
ENSDART00000111658 SYDE2-202 protein_coding Danio_rerio 0.0000000002 73

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