C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: somatomedin B and thrombospondin, type 1 domain containing
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000040695 Sbspon-001 ENSMUSG00000032719 10090 - 1:15853862-15892722 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000040695
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000040695 1.596±1.51 8.345±2.86 0.644±0.17 0.115±0.00 1.879±0.57 1.412±0.55 0.227±0.17 1.687±0.43 0.061±0.04 2.510±0.31 0.165±0.06 4.884±2.57 0.060±0.06 0.033±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000132 CIL_000132_0002 CGP 1:15805646-15892722
CIL_0001DK CIL_0001DK_0002 CGP 1:15853862-16093325

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005044 IEA scavenger receptor activity
GO:0005578 IEA proteinaceous extracellular matrix
GO:0006898 IEA receptor-mediated endocytosis
GO:0006955 IEA immune response
GO:0008150 ND biological_process
GO:0030247 IEA polysaccharide binding
GO:0031012 IEA extracellular matrix

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000297354 SBSPON-001 protein_coding Homo_sapiens 0 942
ENST00000519697 SBSPON-002 processed_transcript Homo_sapiens 0 638

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