C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transcription factor B1, mitochondrial
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000041003 Tfb1m-201 ENSMUSG00000036983 10090 - 17:3519263-3557713 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000041003
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000041003 2.199±0.66 5.427±0.95 5.783±0.00 1.606±0.97 1.657±0.00 2.757±0.41 2.531±0.22 5.877±3.99 1.297±0.09 3.565±0.39 4.929±1.91 3.799±1.85 15.381±5.30

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00055J CIL_00055J_0002 CGP 17:3114972-3519397
CIL_00055I CIL_00055I_0002 CGP 17:3326573-3557713
CIL_0002QM CIL_0002QM_0003 CGP 17:3519263-3557713

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000179 IEA rRNA (adenine-N6,N6-)-dimethyltransferase activity
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005739 IDA mitochondrion
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0031167 IEA rRNA methylation
GO:0042645 IEA mitochondrial nucleoid
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000367166 TFB1M-001 protein_coding Homo_sapiens 0 1085
ENST00000466349 TFB1M-006 processed_transcript Homo_sapiens 2e-31 139
ENST00000468889 TFB1M-002 processed_transcript Homo_sapiens 0 420
ENST00000470239 TFB1M-004 processed_transcript Homo_sapiens 9e-35 150
ENST00000475849 TFB1M-003 processed_transcript Homo_sapiens 2e-32 143
ENST00000480390 TFB1M-005 processed_transcript Homo_sapiens 0 316
ENST00000487586 TFB1M-007 processed_transcript Homo_sapiens 0 307
ENST00000489874 TFB1M-008 processed_transcript Homo_sapiens 0 449

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