C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: proteasome (prosome, macropain) activator subunit 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000041231 Psme4-001 ENSMUSG00000040850 10090 + 11:30771726-30880361 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000041231
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000041231 11.711±1.21 6.138±0.58 17.122±1.82 20.815±12.27 8.993±3.83 6.755±0.54 25.146±4.29 11.107±1.77 10.590±2.55 6.751±0.38 38.611±2.40 9.149±4.41 9.982±2.76 36.327±12.64

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002ZC CIL_0002ZC_0002 CGP 11:30771726-30893729

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IDA nucleus
GO:0005829 IDA cytosol
GO:0006281 IMP DNA repair
GO:0006974 IDA cellular response to DNA damage stimulus
GO:0007275 IEA multicellular organismal development
GO:0010499 IDA proteasomal ubiquitin-independent protein catabolic process
GO:0010952 IDA positive regulation of peptidase activity
GO:0016504 IDA peptidase activator activity
GO:0035093 IMP spermatogenesis, exchange of chromosomal proteins
GO:0070577 IDA lysine-acetylated histone binding
GO:1990111 IDA spermatoproteasome complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000389993 PSME4-002 nonsense_mediated_decay Homo_sapiens 0 5265
ENST00000404125 PSME4-001 protein_coding Homo_sapiens 0 7926
ENST00000458030 ACYP2-009 processed_transcript Homo_sapiens 2e-35 154
ENST00000461810 PSME4-008 retained_intron Homo_sapiens 0 270
ENST00000466539 PSME4-010 processed_transcript Homo_sapiens 0 388
ENST00000475694 PSME4-007 retained_intron Homo_sapiens 0 213
ENST00000476586 PSME4-004 processed_transcript Homo_sapiens 0 1037
ENST00000478731 PSME4-009 retained_intron Homo_sapiens 0 281
ENST00000481518 PSME4-006 processed_transcript Homo_sapiens 0 702
ENST00000488687 PSME4-005 retained_intron Homo_sapiens 0 632
ENST00000606082 ACYP2-008 protein_coding Homo_sapiens 1e-35 154

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