C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PARK2 co-regulated
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000041463 Pacrg-001 ENSMUSG00000037196 10090 - 17:10403012-10840311 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000041463
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000041463 0.206±0.07 0.594±0.17 0.859±0.20 3.192±0.68 0.289±0.17 0.187±0.10 0.379±0.11 0.670±0.22 0.056±0.03 1.123±0.17 1.190±0.22 1.663±0.72 0.204±0.10 116.808±46.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007W0 CIL_0007W0_0002 VISTA 17:10172540-10773972

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001664 IEA G-protein coupled receptor binding
GO:0003674 ND molecular_function
GO:0003779 IEA actin binding
GO:0005634 IEA nucleus
GO:0005739 IDA mitochondrion
GO:0005829 IDA cytosol
GO:0005929 IDA cilium
GO:0007286 IGI spermatid development
GO:0030544 IEA Hsp70 protein binding
GO:0031072 IEA heat shock protein binding
GO:0031625 IPI ubiquitin protein ligase binding
GO:0031982 IDA vesicle
GO:0034620 TAS cellular response to unfolded protein
GO:0043005 IDA neuron projection
GO:0043014 IEA alpha-tubulin binding
GO:0044297 IDA cell body
GO:0048487 IEA beta-tubulin binding
GO:0051087 IEA chaperone binding
GO:0051879 IEA Hsp90 protein binding
GO:0060548 IMP negative regulation of cell death
GO:0097225 IDA sperm midpiece

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000144344 pacrg-001 protein_coding Danio_rerio 0 459
ENSDART00000129392 PACRG (2 of 2)-201 protein_coding Danio_rerio 0 294
ENST00000337019 PACRG-003 protein_coding Homo_sapiens 0 837
ENST00000366888 PACRG-002 protein_coding Homo_sapiens 0 1306
ENST00000366889 PACRG-001 protein_coding Homo_sapiens 0 1158
ENST00000541974 PACRG-004 nonsense_mediated_decay Homo_sapiens 0 619
ENST00000542669 PACRG-009 processed_transcript Homo_sapiens 0 551
ENST00000544266 PACRG-008 retained_intron Homo_sapiens 0 521
ENST00000611387 PACRG-201 protein_coding Homo_sapiens 7.00649e-44 180

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