C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RIKEN cDNA 6430571L13 gene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000042581 6430571L13Rik-001 ENSMUSG00000037977 10090 + 9:107340602-107349683 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000042581
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000042581 0.389±0.13 0.218±0.10 0.733±0.18 2.314±0.31 2.167±1.46 0.116±0.05 1.334±0.12 2.177±0.34 0.233±0.21 0.258±0.09 16.408±0.56 0.311±0.13 1.302±1.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008D8 CIL_0008D8_0002 VISTA 9:107005935-107609958

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000357203 C3orf18-014 protein_coding Homo_sapiens 0 547
ENST00000422619 C3orf18-013 protein_coding Homo_sapiens 0 359
ENST00000426034 C3orf18-003 protein_coding Homo_sapiens 0 547
ENST00000430746 C3orf18-007 nonsense_mediated_decay Homo_sapiens 0 359
ENST00000441239 C3orf18-006 protein_coding Homo_sapiens 0 357
ENST00000449241 C3orf18-001 protein_coding Homo_sapiens 0 547
ENST00000464080 C3orf18-009 processed_transcript Homo_sapiens 0 359
ENST00000484982 C3orf18-011 processed_transcript Homo_sapiens 0 326
ENST00000486175 C3orf18-012 processed_transcript Homo_sapiens 0 357

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