C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Ral GEF with PH domain and SH3 binding motif 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000042615 Ralgps1-001 ENSMUSG00000038831 10090 - 2:33133421-33371481 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartLungOvaryPlacentaTestisENSMUST00000042615
Transcript ID Brain Breast Colon Heart Lung Ovary Placenta Testis
ENSMUST00000042615 11.223±6.31 0.559±0.07 0.676±0.15 0.247±0.00 0.630±0.00 1.264±0.00 1.594±1.10 2.578±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YA CIL_0008YA_0002 VISTA 2:32608279-33209524
CIL_00075D CIL_00075D_0002 CGP 2:33133421-33371486

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0007264 IEA small GTPase mediated signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000098840 ralgps1-001 protein_coding Danio_rerio 0 442
ENST00000259351 RALGPS1-001 protein_coding Homo_sapiens 0 1134
ENST00000319107 RALGPS1-009 protein_coding Homo_sapiens 0 372
ENST00000373434 RALGPS1-002 protein_coding Homo_sapiens 0 1605
ENST00000373436 RALGPS1-007 protein_coding Homo_sapiens 0 966
ENST00000373439 RALGPS1-008 retained_intron Homo_sapiens 0 586
ENST00000394011 RALGPS1-012 protein_coding Homo_sapiens 0 379
ENST00000394022 RALGPS1-006 protein_coding Homo_sapiens 0 966
ENST00000424082 RALGPS1-201 protein_coding Homo_sapiens 0 1766
ENST00000438723 RALGPS1-005 protein_coding Homo_sapiens 0 1048
ENST00000471643 RALGPS1-004 processed_transcript Homo_sapiens 0 351
ENST00000472427 RALGPS1-010 processed_transcript Homo_sapiens 0 372
ENST00000477700 RALGPS1-011 processed_transcript Homo_sapiens 0 455
ENST00000480993 RALGPS1-013 processed_transcript Homo_sapiens 0 313

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