C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DNA polymerase N
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000042954 Poln-201 ENSMUSG00000045102 10090 - 5:34007198-34169448 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungOvaryTestisENSMUST00000042954
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Ovary Testis
ENSMUST00000042954 1.006±0.60 1.097±0.00 1.825±1.25 0.067±0.03 0.327±0.09 0.292±0.17 0.043±0.02 0.292±0.11 0.717±0.27 3.937±0.51

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006VA CIL_0006VA_0002 CGP 5:33995984-34169448
CIL_0006VB CIL_0006VB_0002 CGP 5:34007198-34169448

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000724 IEA double-strand break repair via homologous recombination
GO:0003677 IEA DNA binding
GO:0003887 ISO DNA-directed DNA polymerase activity
GO:0005515 IEA protein binding
GO:0005634 ISO nucleus
GO:0006261 ISO DNA-dependent DNA replication
GO:0019985 IEA translesion synthesis
GO:0030332 IEA cyclin binding
GO:0036297 IEA interstrand cross-link repair

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000243706 HAUS3-001 protein_coding Homo_sapiens 5e-33 148
ENST00000382865 POLN-201 protein_coding Homo_sapiens 0 1978
ENST00000503601 POLN-010 retained_intron Homo_sapiens 0 231
ENST00000506518 POLN-007 processed_transcript Homo_sapiens 0 237
ENST00000510344 POLN-008 retained_intron Homo_sapiens 0 243
ENST00000511098 POLN-004 protein_coding Homo_sapiens 0 1393
ENST00000511885 POLN-001 protein_coding Homo_sapiens 0 1997
ENST00000514858 POLN-002 retained_intron Homo_sapiens 0 604
ENST00000515357 POLN-003 processed_transcript Homo_sapiens 0 1171

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