C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sema domain, immunoglobulin domain (Ig), and GPI membrane anchor, (semaphorin) 7A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000043059 Sema7a-201 ENSMUSG00000038264 10090 + 9:57940113-57962864 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000043059
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000043059 18.010±4.55 19.686±4.43 6.663±0.28 17.546±6.31 14.681±5.82 5.783±0.89 10.571±1.16 4.507±0.24 0.124±0.05 40.591±7.33 4.119±0.62 51.090±17.75 16.859±10.36 11.037±4.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007UD CIL_0007UD_0002 VISTA 9:57506610-58107834

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001649 IEA osteoblast differentiation
GO:0001934 IDA positive regulation of protein phosphorylation
GO:0004872 IEA receptor activity
GO:0005178 IPI integrin binding
GO:0005886 TAS plasma membrane
GO:0006954 IEA inflammatory response
GO:0007229 ISS integrin-mediated signaling pathway
GO:0009897 IDA external side of plasma membrane
GO:0021988 IDA olfactory lobe development
GO:0031175 IMP neuron projection development
GO:0031225 IEA anchored component of membrane
GO:0045773 ISS positive regulation of axon extension
GO:0048675 IDA axon extension
GO:0050727 IDA regulation of inflammatory response
GO:0060907 IDA positive regulation of macrophage cytokine production
GO:0070374 ISS positive regulation of ERK1 and ERK2 cascade

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261918 SEMA7A-001 protein_coding Homo_sapiens 0 2599
ENST00000542748 SEMA7A-201 protein_coding Homo_sapiens 0 2355
ENST00000543145 SEMA7A-002 protein_coding Homo_sapiens 0 2085

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