C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: src homology 2 domain-containing transforming protein D
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000044216 Shd-201 ENSMUSG00000039154 10090 + 17:55970467-55976617 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000044216
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000044216 1.379±1.24 1.077±0.50 0.473±0.00 41.086±20.81 0.367±0.13 0.613±0.28 0.428±0.18 5.373±1.29 0.117±0.12 0.392±0.10 0.104±0.04 0.901±0.53 0.196±0.07 0.168±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00034Q CIL_00034Q_0002 CGP 17:55959187-55976617

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000152112 SHF-003 protein_coding Danio_rerio 0.000000000006 77
ENST00000543264 SHD-001 protein_coding Homo_sapiens 0 604
ENST00000593383 SHD-003 nonsense_mediated_decay Homo_sapiens 0 322
ENST00000597466 SHD-005 retained_intron Homo_sapiens 0 224
ENST00000599689 SHD-002 protein_coding Homo_sapiens 0 351
ENST00000600475 SHD-004 processed_transcript Homo_sapiens 4e-33 145

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