C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: leucine-rich repeats and immunoglobulin-like domains 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000046316 Lrig2-201 ENSMUSG00000032913 10090 - 3:104453984-104511856 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000046316
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000046316 3.705±1.68 5.023±0.56 2.095±0.37 3.261±1.09 2.516±1.32 3.662±0.41 0.834±0.15 1.288±0.50 1.181±0.32 2.999±1.02 0.872±0.28 4.928±1.95 2.549±1.15 1.752±0.82

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006X1 CIL_0006X1_0002 CGP 3:104013259-104511856
CIL_000878 CIL_000878_0002 VISTA 3:104296935-104900599
CIL_0009BY CIL_0009BY_0002 VISTA 3:104296978-104900566

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0007605 IMP sensory perception of sound
GO:0010640 IGI regulation of platelet-derived growth factor receptor signaling pathway
GO:0016021 IEA integral component of membrane
GO:0060384 IGI innervation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000361127 LRIG2-001 protein_coding Homo_sapiens 0 3951
ENST00000466069 LRIG2-004 processed_transcript Homo_sapiens 0 289
ENST00000466161 LRIG2-003 processed_transcript Homo_sapiens 0 2414
ENST00000470000 LRIG2-005 processed_transcript Homo_sapiens 0 200
ENST00000492207 LRIG2-002 processed_transcript Homo_sapiens 0 2512

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