C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAD54 like 2 (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000046502 Rad54l2-001 ENSMUSG00000040661 10090 - 9:106688082-106789194 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000046502
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000046502 3.621±1.15 5.535±1.62 2.429±0.33 4.122±1.11 2.517±0.69 3.151±0.53 1.550±0.40 3.030±0.25 2.308±0.71 4.038±0.22 1.446±0.18 5.044±0.97 2.807±1.52 3.011±0.88

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00087C CIL_00087C_0002 VISTA 9:106116951-106718793

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003712 IDA transcription cofactor activity
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0019901 IPI protein kinase binding
GO:2001141 IDA regulation of RNA biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000409535 RAD54L2-001 protein_coding Homo_sapiens 0 6333
ENST00000419358 TEX264-012 protein_coding Homo_sapiens 0 237
ENST00000432863 RAD54L2-005 protein_coding Homo_sapiens 0 5214
ENST00000461680 RAD54L2-002 retained_intron Homo_sapiens 0 3677
ENST00000462377 RAD54L2-004 retained_intron Homo_sapiens 0 289
ENST00000487093 RAD54L2-003 retained_intron Homo_sapiens 0 4335
ENST00000597392 CTC-457E21.4-001 processed_pseudogene Homo_sapiens 0 872

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