C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cleavage and polyadenylation specific factor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000047357 Cpsf2-201 ENSMUSG00000041781 10090 + 12:101975974-102005993 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000047357
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000047357 2.452±0.13 8.551±0.64 5.222±0.37 7.277±0.65 3.176±1.17 3.711±1.53 2.804±0.25 3.229±0.47 6.357±4.25 3.187±0.84 3.594±0.20 4.693±3.00 6.744±1.31 4.477±1.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002N4 CIL_0002N4_0003 CGP 12:101975974-102267091

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003723 IEA RNA binding
GO:0005515 IEA protein binding
GO:0005847 ISS mRNA cleavage and polyadenylation specificity factor complex
GO:0006378 IEA mRNA polyadenylation
GO:0006379 IEA mRNA cleavage
GO:0006398 ISS histone mRNA 3'-end processing
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000298875 CPSF2-001 protein_coding Homo_sapiens 0 3029
ENST00000553427 CPSF2-004 protein_coding Homo_sapiens 0 289
ENST00000555244 CPSF2-007 protein_coding Homo_sapiens 0 765
ENST00000556622 CPSF2-006 retained_intron Homo_sapiens 2e-37 163

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