C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002N4_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000028971-ENSDARG00000067509 CGP 7955 20:50365142-50510462
GeneTranscriptPositionBiotype
ENSDARG00000028971 (cpsf2)
cleavage and polyadenylation specific factor 2 		ENSDART00000047212 (cpsf2-201) 50365142-50398344 protein_coding
ENSDART00000137725 (cpsf2-001) 50374145-50398350 protein_coding
ENSDARG00000067509 (slc24a4b)
solute carrier family 24 (sodium/potassium/calcium exchanger), member 4b 		ENSDART00000031139 (slc24a4b-001) 50427590-50510462 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0002N4_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000165934-ENSG00000140090 CGP 9606 14:92121937-92501483
GeneTranscriptPositionBiotype
ENSG00000140090 (SLC24A4)
solute carrier family 24 (sodium/potassium/calcium exchanger), member 4 		ENST00000393265 (SLC24A4-003) 92322581-92496251 protein_coding
ENST00000525557 (SLC24A4-007) 92439364-92496252 protein_coding
ENST00000526482 (SLC24A4-005) 92452766-92496252 retained_intron
ENST00000531433 (SLC24A4-002) 92323193-92496251 protein_coding
ENST00000532405 (SLC24A4-001) 92323605-92501483 protein_coding
ENST00000554461 (SLC24A4-009) 92408379-92442753 protein_coding
ENST00000554925 (SLC24A4-008) 92443365-92493922 retained_intron
ENST00000556739 (SLC24A4-004) 92450218-92462747 processed_transcript
ENSG00000165934 (CPSF2)
cleavage and polyadenylation specific factor 2, 100kDa 		ENST00000298875 (CPSF2-001) 92121937-92172145 protein_coding
ENST00000553427 (CPSF2-004) 92121972-92134103 protein_coding
ENST00000554290 (CPSF2-005) 92121985-92135432 nonsense_mediated_decay
ENST00000555244 (CPSF2-007) 92155179-92161246 protein_coding
ENST00000556622 (CPSF2-006) 92154021-92155153 retained_intron

Homo sapiens Ensembl (GRCh38)

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CIL_0002N4_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000041781-ENSMUSG00000041771 CGP 10090 12:101975974-102267091
GeneTranscriptPositionBiotype
ENSMUSG00000041771 (Slc24a4)
solute carrier family 24 (sodium/potassium/calcium exchanger), member 4 		ENSMUST00000079020 (Slc24a4-001) 102129174-102266749 protein_coding
ENSMUST00000159329 (Slc24a4-002) 102128733-102267091 protein_coding
ENSMUST00000161325 (Slc24a4-003) 102129391-102266641 protein_coding
ENSMUSG00000041781 (Cpsf2)
cleavage and polyadenylation specific factor 2 		ENSMUST00000047357 (Cpsf2-201) 101975974-102005993 protein_coding
ENSMUSG00000064776 (Gm25203)
predicted gene, 25203 		ENSMUST00000082842 (Gm25203-201) 102253473-102253687 snoRNA
ENSMUSG00000090050 (Gm16339)
predicted gene 16339 		ENSMUST00000160954 (Gm16339-001) 102127806-102129906 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002N4_0001ENSDARG00000028971ENSDART00000047212ENSDART00000137725ENSDARG00000067509ENSDART00000031139CIL_0002N4_0002ENSG00000140090ENST00000393265ENST00000525557ENST00000526482ENST00000531433ENST00000532405ENST00000554461ENST00000554925ENST00000556739ENSG00000165934ENST00000298875ENST00000553427ENST00000554290ENST00000555244ENST00000556622CIL_0002N4_0003ENSMUSG00000041771ENSMUST00000079020ENSMUST00000159329ENSMUST00000161325ENSMUSG00000041781ENSMUST00000047357ENSMUSG00000064776ENSMUST00000082842ENSMUSG00000090050ENSMUST00000160954
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002N4_0001ENSDARG00000028971ENSDART00000047212ENSDART00000137725ENSDARG00000067509ENSDART00000031139CIL_0002N4_0002ENSG00000140090ENST00000393265ENST00000525557ENST00000526482ENST00000531433ENST00000532405ENST00000554925ENST00000556739ENSG00000165934ENST00000298875ENST00000555244CIL_0002N4_0003ENSMUSG00000041771ENSMUST00000079020ENSMUST00000159329ENSMUST00000161325ENSMUSG00000041781ENSMUST00000047357ENSMUSG00000064776ENSMUST00000082842ENSMUSG00000090050ENSMUST00000160954
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000028971 ENSDART00000047212 N/A N/A N/A 5.468±1.60 N/A N/A 5.386±0.65 5.653±0.00 2.177±0.00 N/A 1.974±0.00 N/A N/A N/A
ENSDART00000137725 N/A N/A N/A 0.825±0.73 N/A N/A 1.266±0.00 0.925±0.45 N/A N/A 0.742±0.00 N/A N/A N/A
ENSDARG00000067509 ENSDART00000031139 N/A N/A N/A 0.840±1.08 N/A N/A 0.366±0.05 0.199±0.00 N/A N/A 0.139±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000140090 ENST00000393265 N/A N/A N/A N/A N/A 0.118±0.00 N/A N/A N/A 0.105±0.00 N/A N/A N/A N/A
ENST00000525557 N/A N/A N/A N/A 0.041±0.00 N/A 0.010±0.00 N/A N/A N/A N/A 0.022±0.00 0.132±0.09 N/A
ENST00000526482 N/A N/A N/A N/A 0.103±0.00 N/A N/A N/A 0.120±0.00 0.162±0.06 N/A 0.032±0.00 N/A N/A
ENST00000531433 N/A N/A N/A 0.699±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532405 0.126±0.00 0.207±0.00 N/A 1.434±0.00 0.081±0.06 0.053±0.00 N/A 0.042±0.02 N/A N/A 0.001±0.00 0.042±0.00 0.033±0.01 N/A
ENST00000554461 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554925 N/A N/A N/A N/A N/A N/A 0.029±0.00 0.084±0.00 N/A N/A 0.064±0.00 N/A 0.143±0.00 N/A
ENST00000556739 N/A 0.173±0.00 N/A N/A 0.093±0.00 N/A N/A N/A 0.066±0.00 0.200±0.00 0.021±0.00 N/A N/A N/A
ENSG00000165934 ENST00000298875 2.613±0.00 2.676±0.00 1.643±0.00 1.829±0.00 2.501±0.78 2.379±0.42 1.301±0.28 1.897±0.30 2.207±0.65 1.423±0.80 1.814±0.89 2.237±0.26 2.077±0.67 4.901±0.90
ENST00000553427 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554290 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555244 9.271±0.00 10.505±0.00 N/A 9.911±0.00 7.649±0.00 9.613±0.00 6.160±0.00 6.866±2.56 7.186±0.00 11.248±0.00 6.930±3.12 7.636±1.69 7.111±3.64 23.998±2.78
ENST00000556622 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000041771 ENSMUST00000079020 0.116±0.11 0.056±0.00 0.024±0.00 0.129±0.00 N/A 0.087±0.00 0.233±0.14 0.056±0.01 0.063±0.02 5.366±2.34 N/A 0.526±0.13 0.060±0.01 0.016±0.00
ENSMUST00000159329 0.071±0.06 0.158±0.10 0.005±0.00 0.114±0.00 0.038±0.02 0.025±0.02 0.079±0.03 0.031±0.01 N/A 2.173±0.04 0.011±0.00 0.599±0.43 0.028±0.01 0.070±0.03
ENSMUST00000161325 0.077±0.00 0.169±0.05 0.005±0.00 0.227±0.00 0.053±0.03 0.035±0.00 0.312±0.15 0.028±0.00 0.054±0.03 N/A N/A 0.304±0.00 0.064±0.07 0.124±0.04
ENSMUSG00000041781 ENSMUST00000047357 2.452±0.13 8.551±0.64 5.222±0.37 7.277±0.65 3.176±1.17 3.711±1.53 2.804±0.25 3.229±0.47 6.357±4.25 3.187±0.84 3.594±0.20 4.693±3.00 6.744±1.31 4.477±1.01
ENSMUSG00000064776 ENSMUST00000082842 N/A N/A N/A 0.287±0.00 N/A N/A N/A N/A N/A N/A N/A 0.829±0.00 N/A N/A
ENSMUSG00000090050 ENSMUST00000160954 N/A N/A N/A 0.104±0.03 N/A N/A 0.030±0.00 N/A N/A 0.182±0.09 N/A 0.083±0.00 N/A N/A

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