C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cirrhosis, autosomal recessive 1A (human)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000047629 Cirh1a-201 ENSMUSG00000041438 10090 + 8:106893640-106923093 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000047629
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000047629 18.266±1.14 18.040±1.02 12.605±1.98 11.278±4.63 13.679±7.19 9.539±0.81 8.203±0.64 12.438±0.71 15.289±8.45 8.881±1.01 7.710±0.39 19.926±7.98 13.566±5.17 12.630±4.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004CT CIL_0004CT_0002 CGP 8:106883863-106923093
CIL_0004I5 CIL_0004I5_0002 CGP 8:106893640-107014192

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005730 ISS nucleolus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0030490 ISS maturation of SSU-rRNA
GO:0034455 ISS t-UTP complex
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000314423 CIRH1A-001 protein_coding Homo_sapiens 0 2549
ENST00000352319 CIRH1A-003 protein_coding Homo_sapiens 0 1279
ENST00000562237 CIRH1A-004 protein_coding Homo_sapiens 0 2423
ENST00000563094 CIRH1A-002 protein_coding Homo_sapiens 0 2211
ENST00000563299 CIRH1A-006 protein_coding Homo_sapiens 0 575
ENST00000566227 CIRH1A-010 protein_coding Homo_sapiens 0 695
ENST00000567015 CIRH1A-011 retained_intron Homo_sapiens 0 494
ENST00000567235 CIRH1A-007 protein_coding Homo_sapiens 0 595
ENST00000567460 CIRH1A-009 protein_coding Homo_sapiens 0 542
ENST00000567500 CIRH1A-016 protein_coding Homo_sapiens 0 638
ENST00000568448 CIRH1A-008 protein_coding Homo_sapiens 0 531
ENST00000569014 CIRH1A-013 processed_transcript Homo_sapiens 0 496
ENST00000569615 CIRH1A-015 processed_transcript Homo_sapiens 0 412
ENST00000569800 CIRH1A-012 retained_intron Homo_sapiens 0 494
ENST00000575702 CIRH1A-001 protein_coding Homo_sapiens 0 1840

Loading