C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coiled-coil domain containing 18
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000047677 Ccdc18-201 ENSMUSG00000056531 10090 + 5:108132914-108232947 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000047677
Transcript ID Adipose Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000047677 0.029±0.03 0.046±0.03 0.245±0.15 0.041±0.00 0.050±0.01 0.022±0.01 0.406±0.45 0.035±0.02 0.010±0.00 1.091±1.05 1.001±0.60 6.204±7.92

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005ZV CIL_0005ZV_0002 CGP 5:108106366-108232947
CIL_0005ZW CIL_0005ZW_0002 CGP 5:108132914-108280526

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000343253 CCDC18-008 protein_coding Homo_sapiens 0 4697
ENST00000370276 CCDC18-001 protein_coding Homo_sapiens 0 4843
ENST00000401026 CCDC18-003 protein_coding Homo_sapiens 0 4253
ENST00000421014 CCDC18-010 processed_transcript Homo_sapiens 0 531
ENST00000447456 CCDC18-005 retained_intron Homo_sapiens 0 787
ENST00000448243 CCDC18-006 protein_coding Homo_sapiens 0 298
ENST00000455267 CCDC18-004 protein_coding Homo_sapiens 0 1376
ENST00000479653 CCDC18-007 nonsense_mediated_decay Homo_sapiens 0 368
ENST00000481180 CCDC18-002 nonsense_mediated_decay Homo_sapiens 0 1280

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