C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Sec24 related gene family, member D (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000047923 Sec24d-201 ENSMUSG00000039234 10090 + 3:123267496-123365635 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000047923
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000047923 22.407±9.25 87.865±13.53 17.615±1.49 5.971±0.09 22.108±8.03 39.152±4.59 8.798±1.59 8.783±3.00 16.200±8.81 21.600±6.55 1.287±0.20 41.707±18.04 21.788±9.73 1.552±0.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005EP CIL_0005EP_0002 CGP 3:123076519-123365635

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001701 IMP in utero embryonic development
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0006886 IEA intracellular protein transport
GO:0006888 IEA ER to Golgi vesicle-mediated transport
GO:0008270 IEA zinc ion binding
GO:0030127 IEA COPII vesicle coat

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000280551 SEC24D-001 protein_coding Homo_sapiens 0 3302
ENST00000419654 SEC24D-201 protein_coding Homo_sapiens 0 2344
ENST00000502526 SEC24D-015 retained_intron Homo_sapiens 0 248
ENST00000505134 SEC24D-006 processed_transcript Homo_sapiens 0 1386
ENST00000509818 SEC24D-004 nonsense_mediated_decay Homo_sapiens 0 481
ENST00000511033 SEC24D-013 processed_transcript Homo_sapiens 0 586
ENST00000511481 SEC24D-002 protein_coding Homo_sapiens 0 2444
ENST00000514418 SEC24D-012 retained_intron Homo_sapiens 0 226
ENST00000514561 SEC24D-003 nonsense_mediated_decay Homo_sapiens 0 1386

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