C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: beta-1,4-N-acetyl-galactosaminyl transferase 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000048002 B4galnt4-201 ENSMUSG00000055629 10090 + 7:141061274-141072119 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000048002
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000048002 0.592±0.51 0.520±0.28 0.136±0.00 24.814±7.60 0.417±0.15 0.979±0.42 0.029±0.01 0.053±0.03 0.181±0.18 0.078±0.02 0.100±0.05 0.792±0.41 0.729±0.54 4.315±2.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002UH CIL_0002UH_0002 CGP 7:141061274-141090510

Gene Ontology

GO IDEvidence TypeGO Description
GO:0008152 IEA metabolic process
GO:0008376 ISS acetylgalactosaminyltransferase activity
GO:0016021 IEA integral component of membrane
GO:0032580 IEA Golgi cisterna membrane
GO:0033842 IEA N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000329962 B4GALNT4-001 protein_coding Homo_sapiens 0 2606
ENST00000534778 B4GALNT4-005 nonsense_mediated_decay Homo_sapiens 0 233

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