C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PHD finger protein 20-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000048188 Phf20l1-201 ENSMUSG00000072501 10090 + 15:66577572-66645255 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000048188
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000048188 1.618±0.51 3.474±0.33 8.481±0.61 10.331±2.63 2.730±0.73 1.950±0.32 2.613±0.40 1.667±0.36 2.634±1.47 4.264±0.70 3.643±1.91 7.002±4.21 2.678±1.35 1.239±0.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009D4 CIL_0009D4_0002 VISTA 15:66524301-67127162
CIL_0004PX CIL_0004PX_0002 CGP 15:66526212-66645255
CIL_0004PY CIL_0004PY_0002 CGP 15:66577572-66850721

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000220847 PHF20L1-201 protein_coding Homo_sapiens 0 2887
ENST00000315808 PHF20L1-001 retained_intron Homo_sapiens 0 2368
ENST00000337920 PHF20L1-002 protein_coding Homo_sapiens 0 845
ENST00000361997 PHF20L1-009 retained_intron Homo_sapiens 0 1264
ENST00000395374 PHF20L1-004 retained_intron Homo_sapiens 0 518
ENST00000395376 PHF20L1-010 protein_coding Homo_sapiens 0 1393
ENST00000395379 PHF20L1-003 protein_coding Homo_sapiens 0 1530
ENST00000395383 PHF20L1-011 retained_intron Homo_sapiens 0 2290
ENST00000395386 PHF20L1-008 protein_coding Homo_sapiens 0 5478
ENST00000395390 PHF20L1-015 protein_coding Homo_sapiens 0 4449
ENST00000460236 PHF20L1-014 nonsense_mediated_decay Homo_sapiens 0 2784
ENST00000469979 PHF20L1-007 retained_intron Homo_sapiens 0 518
ENST00000477051 PHF20L1-013 retained_intron Homo_sapiens 0 1847
ENST00000485595 PHF20L1-005 retained_intron Homo_sapiens 0 850
ENST00000486199 PHF20L1-006 nonsense_mediated_decay Homo_sapiens 0 678
ENST00000493126 PHF20L1-012 retained_intron Homo_sapiens 0 333
ENST00000521038 PHF20L1-017 nonsense_mediated_decay Homo_sapiens 0 252
ENST00000522253 PHF20L1-018 retained_intron Homo_sapiens 0 431
ENST00000522580 PHF20L1-016 protein_coding Homo_sapiens 0 449
ENST00000622263 PHF20L1-202 protein_coding Homo_sapiens 0 3875

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