C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SUN domain containing ossification factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000048377 Suco-201 ENSMUSG00000040297 10090 - 1:161816112-161876661 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000048377
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000048377 2.077±0.99 5.682±2.31 3.206±1.34 3.665±1.56 2.311±1.47 2.358±0.68 0.966±0.10 2.288±0.22 1.515±1.06 2.591±0.73 0.816±0.37 5.525±2.00 4.631±1.81 12.458±3.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007X6 CIL_0007X6_0002 VISTA 1:161774031-162377560

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001503 IEA ossification
GO:0003674 ND molecular_function
GO:0005791 IDA rough endoplasmic reticulum
GO:0007275 IEA multicellular organismal development
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0032967 IMP positive regulation of collagen biosynthetic process
GO:0045669 IMP positive regulation of osteoblast differentiation
GO:0046850 IMP regulation of bone remodeling

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000263688 SUCO-001 protein_coding Homo_sapiens 0 5121
ENST00000367723 SUCO-002 protein_coding Homo_sapiens 0 4578
ENST00000486569 SUCO-003 retained_intron Homo_sapiens 0 246
ENST00000608151 SUCO-201 protein_coding Homo_sapiens 0 4578
ENST00000608566 SUCO-005 retained_intron Homo_sapiens 0 261
ENST00000608673 SUCO-006 retained_intron Homo_sapiens 0 291
ENST00000608804 SUCO-007 retained_intron Homo_sapiens 0 876
ENST00000609685 SUCO-008 retained_intron Homo_sapiens 0 459
ENST00000610051 SUCO-004 protein_coding Homo_sapiens 0 1925
ENST00000616058 SUCO-202 protein_coding Homo_sapiens 0 2931

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