C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: fibrinogen gamma chain
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000048486 Fgg-201 ENSMUSG00000033860 10090 + 3:83007859-83015053 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000048486
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000048486 0.223±0.19 0.601±0.42 0.187±0.00 0.042±0.01 10.377±1.50 0.164±0.09 0.330±0.27 4.086±1.86 1606.903±1113.83 0.742±0.39 0.046±0.03 1.272±0.83 136.768±145.12 0.222±0.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008D1 CIL_0008D1_0002 VISTA 3:82670874-83271669

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005102 IEA receptor binding
GO:0005198 IEA structural molecule activity
GO:0005577 IEA fibrinogen complex
GO:0005615 IEA extracellular space
GO:0005737 IEA cytoplasm
GO:0005938 IDA cell cortex
GO:0007160 IEA cell-matrix adhesion
GO:0007165 IEA signal transduction
GO:0009897 IEA external side of plasma membrane
GO:0009986 IEA cell surface
GO:0030674 IEA protein binding, bridging
GO:0031091 IEA platelet alpha granule
GO:0034116 IEA positive regulation of heterotypic cell-cell adhesion
GO:0043623 IEA cellular protein complex assembly
GO:0045907 IEA positive regulation of vasoconstriction
GO:0045921 IEA positive regulation of exocytosis
GO:0046872 IEA metal ion binding
GO:0050714 IEA positive regulation of protein secretion
GO:0050839 IEA cell adhesion molecule binding
GO:0051258 IEA protein polymerization
GO:0051592 IEA response to calcium ion
GO:0070062 IEA extracellular vesicular exosome
GO:0070374 IEA positive regulation of ERK1 and ERK2 cascade
GO:0070527 IEA platelet aggregation
GO:0072562 IEA blood microparticle
GO:0090277 IEA positive regulation of peptide hormone secretion
GO:1902042 IEA negative regulation of extrinsic apoptotic signaling pathway via death domain receptors
GO:2000352 IEA negative regulation of endothelial cell apoptotic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000336098 FGG-002 protein_coding Homo_sapiens 0 1203
ENST00000404648 FGG-001 protein_coding Homo_sapiens 0 1413
ENST00000405164 FGG-006 protein_coding Homo_sapiens 0 1251
ENST00000407946 FGG-007 protein_coding Homo_sapiens 0 1101
ENST00000465913 FGG-003 retained_intron Homo_sapiens 0 852
ENST00000492082 FGG-004 retained_intron Homo_sapiens 0 1007

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