C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SRY (sex determining region Y)-box 30
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000049038 Sox30-001 ENSMUSG00000040489 10090 + 11:45980310-46017994 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000049038
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000049038 0.072±0.03 0.170±0.05 0.057±0.00 0.046±0.01 0.130±0.05 0.109±0.01 0.065±0.02 0.055±0.02 0.014±0.01 0.090±0.06 0.020±0.00 0.371±0.20 0.138±0.12 52.253±17.95

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00094M CIL_00094M_0002 VISTA 11:45901358-46503267

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000981 IEA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0005634 IEA nucleus
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0006366 IEA transcription from RNA polymerase II promoter
GO:0007283 IEP spermatogenesis
GO:0031960 IEA response to corticosteroid
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000265007 SOX30-001 protein_coding Homo_sapiens 0 2313
ENST00000311371 SOX30-002 protein_coding Homo_sapiens 0 1184
ENST00000519442 SOX30-004 protein_coding Homo_sapiens 0 1635

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