C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Usher syndrome 1C binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000049184 Ushbp1-201 ENSMUSG00000034911 10090 - 8:71384274-71395801 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000049184
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000049184 12.934±10.35 4.874±0.91 1.734±0.30 1.096±0.61 5.373±0.67 1.628±0.71 6.794±2.21 3.110±0.67 1.167±0.65 16.677±3.24 1.191±0.33 4.902±2.24 2.376±2.90 0.140±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00010Q CIL_00010Q_0002 CGP 8:71384274-71404772

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0030165 IEA PDZ domain binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000252597 USHBP1-001 protein_coding Homo_sapiens 0 627
ENST00000324554 USHBP1-002 nonsense_mediated_decay Homo_sapiens 0 368
ENST00000431146 USHBP1-003 protein_coding Homo_sapiens 0 627
ENST00000597928 USHBP1-004 nonsense_mediated_decay Homo_sapiens 0 368

Loading