C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small nuclear ribonucleoprotein D2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000049294 Snrpd2-001 ENSMUSG00000040824 10090 + 7:19149722-19152735 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000049294
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000049294 44.757±6.53 13.964±2.75 150.783±13.85 108.928±23.15 19.710±2.85 35.485±4.82 42.556±3.15 55.345±6.11 89.054±69.90 29.567±1.54 48.708±5.72 94.077±30.74 116.905±45.17 200.412±25.08

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000387 ISS spliceosomal snRNP assembly
GO:0005681 IEA spliceosomal complex
GO:0005685 ISS U1 snRNP
GO:0005687 ISS U4 snRNP
GO:0005829 ISS cytosol
GO:0034709 ISS methylosome
GO:0034715 ISS pICln-Sm protein complex
GO:0034719 ISS SMN-Sm protein complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000342669 SNRPD2-001 protein_coding Homo_sapiens 0 516
ENST00000391932 SNRPD2-004 protein_coding Homo_sapiens 0 486
ENST00000489253 SNRPD2P1-001 processed_pseudogene Homo_sapiens 0 440
ENST00000585392 SNRPD2-006 protein_coding Homo_sapiens 0 350
ENST00000587367 SNRPD2-005 protein_coding Homo_sapiens 0 484
ENST00000588301 SNRPD2-002 protein_coding Homo_sapiens 0 503
ENST00000588599 SNRPD2-007 protein_coding Homo_sapiens 0 484
ENST00000590212 SNRPD2-008 protein_coding Homo_sapiens 0 387

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