C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: acid-sensing (proton-gated) ion channel 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000049346 Asic3-201 ENSMUSG00000038276 10090 + 5:24413451-24417834 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000049346
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000049346 0.156±0.07 0.174±0.10 0.105±0.05 0.235±0.07 0.215±0.09 0.128±0.05 0.149±0.07 0.086±0.06 0.107±0.10 0.103±0.02 0.356±0.08 0.350±0.15 0.906±0.40 0.341±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008T1 CIL_0008T1_0002 VISTA 5:24041638-24646055
CIL_0004O7 CIL_0004O7_0002 CGP 5:24393663-24417834
CIL_0004ET CIL_0004ET_0002 CGP 5:24413451-24423530

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005261 TAS cation channel activity
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005887 IDA integral component of plasma membrane
GO:0006812 IDA cation transport
GO:0009408 IMP response to heat
GO:0009612 IMP response to mechanical stimulus
GO:0010447 IMP response to acidic pH
GO:0030165 IEA PDZ domain binding
GO:0034220 IMP ion transmembrane transport
GO:0035725 IEA sodium ion transmembrane transport
GO:0042930 IMP enterobactin transport
GO:0042931 IMP enterobactin transporter activity
GO:0050907 IMP detection of chemical stimulus involved in sensory perception
GO:0050915 IEA sensory perception of sour taste
GO:0050961 IMP detection of temperature stimulus involved in sensory perception
GO:0050965 IMP detection of temperature stimulus involved in sensory perception of pain
GO:0050966 IMP detection of mechanical stimulus involved in sensory perception of pain
GO:0050968 IMP detection of chemical stimulus involved in sensory perception of pain
GO:0050974 IMP detection of mechanical stimulus involved in sensory perception
GO:0098655 TAS cation transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000297512 ASIC3-005 protein_coding Homo_sapiens 0 1225
ENST00000349064 ASIC3-003 protein_coding Homo_sapiens 0 1312
ENST00000357922 ASIC3-001 protein_coding Homo_sapiens 0 1188
ENST00000377904 ASIC3-002 nonsense_mediated_decay Homo_sapiens 0 856
ENST00000468325 ASIC3-004 nonsense_mediated_decay Homo_sapiens 0 856
ENST00000474135 ASIC3-006 retained_intron Homo_sapiens 0 228

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