C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: acid-sensing (proton-gated) ion channel 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000468325 ASIC3-004 ENSG00000213199 9606 + 7:151048767-151052753 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastKidneyLiverMuscleOvaryPlacentaENST00000468325
Transcript ID Bladder Breast Kidney Liver Muscle Ovary Placenta
ENST00000468325 0.097±0.00 0.041±0.00 0.429±0.00 0.175±0.00 0.281±0.11 0.556±0.00 0.184±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008T1 CIL_0008T1_0001 VISTA 7:150668461-151272977
CIL_0004O7 CIL_0004O7_0001 CGP 7:151028422-151052756
CIL_0004ET CIL_0004ET_0001 CGP 7:151048292-151058530

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005261 TAS cation channel activity
GO:0005272 TAS:IEA sodium channel activity
GO:0005737 IEA cytoplasm
GO:0005886 TAS plasma membrane
GO:0006810 TAS transport
GO:0006814 IEA sodium ion transport
GO:0007165 TAS signal transduction
GO:0007600 TAS sensory perception
GO:0016020 IEA membrane
GO:0034220 TAS ion transmembrane transport
GO:0035725 IEA sodium ion transmembrane transport
GO:0050915 IMP sensory perception of sour taste
GO:0055085 TAS transmembrane transport
GO:0098655 TAS cation transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000049346 Asic3-201 protein_coding Mus_musculus 0 856
ENSMUST00000037708 Asic4-001 protein_coding Mus_musculus 8.00001e-41 172
ENSMUST00000113577 Asic4-002 protein_coding Mus_musculus 8.00001e-41 172

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