C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sine oculis-related homeobox 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000049454 Six5-001 ENSMUSG00000040841 10090 + 7:19094594-19098549 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000049454
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000049454 18.331±5.75 27.201±4.13 29.212±2.51 4.852±3.74 15.118±2.53 17.125±3.62 6.904±2.13 6.170±1.61 2.813±1.03 14.939±2.13 0.661±0.31 30.011±12.63 3.395±1.86 0.118±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002088 IMP lens development in camera-type eye
GO:0003677 IDA DNA binding
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007286 IMP spermatid development
GO:0008285 IMP negative regulation of cell proliferation
GO:0043565 IDA sequence-specific DNA binding
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:1902723 IMP negative regulation of skeletal muscle satellite cell proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000303077 SIX2-001 protein_coding Homo_sapiens 1e-30 139
ENST00000317578 SIX5-001 protein_coding Homo_sapiens 0 2052
ENST00000560160 SIX5-003 protein_coding Homo_sapiens 0 793
ENST00000560168 SIX5-004 protein_coding Homo_sapiens 0 710

Loading