C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SIX homeobox 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000317578 SIX5-001 ENSG00000177045 9606 - 19:45764785-45769226 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderLiverOvaryPlacentaENST00000317578
Transcript ID Bladder Liver Ovary Placenta
ENST00000317578 0.918±0.00 2.945±0.00 50.160±0.00 11.491±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002088 IEA lens development in camera-type eye
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007286 IEA spermatid development
GO:0008285 IEA negative regulation of cell proliferation
GO:0043565 IEA sequence-specific DNA binding
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:1902723 IEA negative regulation of skeletal muscle satellite cell proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000049454 Six5-001 protein_coding Mus_musculus 0 2052
ENSMUST00000175693 Six4-002 protein_coding Mus_musculus 0 233
ENSMUST00000043208 Six4-001 protein_coding Mus_musculus 0 233

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