C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: oral-facial-digital syndrome 1 gene homolog (human)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000049501 Ofd1-001 ENSMUSG00000040586 10090 - X:166390033-166440704 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000049501
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000049501 0.641±0.21 0.709±0.27 1.081±0.23 2.906±0.13 0.566±0.20 0.630±0.16 0.533±0.13 0.796±0.19 0.893±0.58 0.976±0.30 1.406±0.32 1.892±1.17 4.262±1.54 1.363±0.65

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0005813 IEA centrosome
GO:0005814 IDA centriole
GO:0005929 IDA cilium
GO:0010172 IMP embryonic body morphogenesis
GO:0015630 IEA microtubule cytoskeleton
GO:0016020 IEA membrane
GO:0034451 IDA centriolar satellite
GO:0035082 IMP axoneme assembly
GO:0036064 IDA ciliary basal body
GO:0043014 IDA alpha-tubulin binding
GO:0043015 IDA gamma-tubulin binding
GO:0060271 IMP cilium morphogenesis
GO:0060287 IMP epithelial cilium movement involved in determination of left/right asymmetry
GO:2000314 IMP negative regulation of fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000340096 OFD1-001 protein_coding Homo_sapiens 0 1679
ENST00000380550 OFD1-201 protein_coding Homo_sapiens 0 898
ENST00000380567 OFD1-002 protein_coding Homo_sapiens 0 499
ENST00000398395 OFD1-202 protein_coding Homo_sapiens 0 499
ENST00000437639 OFD1P17-001 processed_pseudogene Homo_sapiens 0 1615
ENST00000485052 OFD1-006 processed_transcript Homo_sapiens 4e-30 135
ENST00000490265 OFD1-003 processed_transcript Homo_sapiens 0 979

Loading