C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: oral-facial-digital syndrome 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000340096 OFD1-001 ENSG00000046651 9606 + X:13734745-13769353 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000340096
Transcript ID Adipose Adrenal Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000340096 1.150±0.00 2.898±0.00 0.558±0.00 1.075±0.27 0.648±0.52 0.786±0.00 0.392±0.14 0.870±0.09 0.582±0.00 2.576±1.05 1.075±0.36 5.363±0.51

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000OM CIL_0000OM_0002 CGP X:13712244-13769353
CIL_0000OC CIL_0000OC_0002 CGP X:13734745-13938638

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000086 TAS G2/M transition of mitotic cell cycle
GO:0000278 TAS mitotic cell cycle
GO:0005515 IPI:IEA protein binding
GO:0005634 IEA nucleus
GO:0005813 IDA centrosome
GO:0005814 IDA centriole
GO:0005829 TAS cytosol
GO:0005929 IDA cilium
GO:0006952 IEA defense response
GO:0009279 IEA cell outer membrane
GO:0010172 IEA embryonic body morphogenesis
GO:0015630 IDA microtubule cytoskeleton
GO:0016020 IDA membrane
GO:0034451 ISS centriolar satellite
GO:0035082 IEA axoneme assembly
GO:0036064 IDA ciliary basal body
GO:0043014 ISS alpha-tubulin binding
GO:0043015 ISS gamma-tubulin binding
GO:0060271 ISS cilium morphogenesis
GO:0060287 ISS epithelial cilium movement involved in determination of left/right asymmetry
GO:2000314 IEA negative regulation of fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000049501 Ofd1-001 protein_coding Mus_musculus 0 1679

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