C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ADP-ribosylation factor 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000050063 Arf6-201 ENSMUSG00000044147 10090 + 12:69372150-69375979 protein_coding

Mus musculus EnsemblGRCm38

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Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000050063
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000050063 29.568±8.78 64.772±16.21 22.383±1.86 13.424±5.21 61.285±37.96 148.569±15.96 8.881±1.41 33.364±4.00 25.200±4.00 73.452±11.51 3.318±0.59 67.697±25.46 26.339±8.30 10.428±2.65

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001726 IEA ruffle
GO:0001889 IMP liver development
GO:0003924 TAS GTPase activity
GO:0005515 IPI protein binding
GO:0005525 TAS GTP binding
GO:0005737 IDA cytoplasm
GO:0005768 ISS endosome
GO:0005769 IEA early endosome
GO:0005794 IEA Golgi apparatus
GO:0005886 IDA plasma membrane
GO:0005925 IEA focal adhesion
GO:0005938 IEA cell cortex
GO:0006184 TAS GTP catabolic process
GO:0007049 IEA cell cycle
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 TAS protein transport
GO:0016020 IEA membrane
GO:0016192 IEA vesicle-mediated transport
GO:0030139 ISS endocytic vesicle
GO:0030838 IEA positive regulation of actin filament polymerization
GO:0030866 IEA cortical actin cytoskeleton organization
GO:0031527 IEA filopodium membrane
GO:0031529 IEA ruffle organization
GO:0031996 IEA thioesterase binding
GO:0033028 IMP myeloid cell apoptotic process
GO:0034143 NAS regulation of toll-like receptor 4 signaling pathway
GO:0034394 IDA protein localization to cell surface
GO:0035020 IEA regulation of Rac protein signal transduction
GO:0036010 ISS protein localization to endosome
GO:0051301 IEA cell division
GO:0051489 IEA regulation of filopodium assembly
GO:0055037 IEA recycling endosome
GO:0055038 ISS recycling endosome membrane
GO:0060998 IMP regulation of dendritic spine development
GO:0070062 IEA extracellular vesicular exosome
GO:0090004 IDA positive regulation of establishment of protein localization to plasma membrane
GO:0090162 IMP establishment of epithelial cell polarity
GO:0097284 IMP hepatocyte apoptotic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000074873 arf6b-201 protein_coding Danio_rerio 0 468
ENSDART00000137807 arf6b-001 protein_coding Danio_rerio 0 468
ENST00000298316 ARF6-001 protein_coding Homo_sapiens 0 1772
ENST00000455459 GS1-259H13.7-001 processed_pseudogene Homo_sapiens 0 710

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